Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1181 125 7e-24 seq1153 116 4e-21 seq1163 96.9 3e-15 >seq1181 Length=949089 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || |||| | |||||||| | || || || ||||||||||||||||| Sbjct 811661 TCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGA 811720 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || ||||| |||||||| | ||||| ||||||||||| || || Sbjct 811721 CAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGG 811780 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || || ||| ||| || ||| || | | |||| |||||| | | ||| | Sbjct 811781 GATGCCTTCTTTATCCTGGATCTT-TGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAA 811839 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | || | || || ||||||| || || || ||||||||||||| Sbjct 811840 CTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGG 811890 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || ||| |||||||| | || || || || ||||||||||| || Sbjct 810066 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810125 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || ||||| || ||| ||||||| | ||||| || || || Sbjct 810126 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810185 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTC-TCGA 127064 || || ||||||||| ||| ||| || |||| | |||| ||||||| || | |||| Sbjct 810186 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTGTCCG-ACGCTTCGA 810243 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 810244 CTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| |||||||| | ||||| || || |||||||| || || Sbjct 811206 CCACCGCGAAGCCTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811265 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || |||||||| ||| ||||||||| ||||||||| || || Sbjct 811266 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGG 811325 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||| ||||| ||||| | |||| ||||| | ||| | | Sbjct 811326 ATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATT 811385 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || ||||| ||||| |||||||||||||| Sbjct 811386 TCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 811432 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || ||| |||||||| | || || || || ||||||||||| || Sbjct 810294 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810353 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || ||||| || ||| ||||||| | ||||| || || || Sbjct 810354 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810413 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTC-TCGA 127064 || || ||||||||| ||| ||| || |||| | |||| || |||| || | |||| Sbjct 810414 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCG-ACGCTTCGA 810471 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 810472 CTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| |||||||| | || || || || ||||||||||| || Sbjct 810522 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810581 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || ||||| || ||| ||||||| | |||||| || || || Sbjct 810582 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810641 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTC-TCGA 127064 || || ||||||||| ||| ||| || |||| | |||| || |||| || | |||| Sbjct 810642 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCG-ACGCTTCGA 810699 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| || ||||| |||||||| ||||| Sbjct 810700 CTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | || | ||| | || || ||||| ||||| || ||||| Sbjct 811433 TCCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGA 811492 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || || || ||||||||||| ||||||||| ||||||||| || || Sbjct 811493 AAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 811552 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||||| ||||| | ||||| ||||| | ||| || Sbjct 811553 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAAC 811612 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || ||||| ||||| ||||| |||||||| Sbjct 811613 TTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| |||||||| | || || || |||||||||||||| || Sbjct 810750 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAA 810809 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || ||||| || ||| ||||||| | |||||| || || || Sbjct 810810 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810869 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| ||| || |||| | |||| || || | ||| || Sbjct 810870 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAAC 810928 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| || || |||||||||||||| Sbjct 810929 TTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| |||||||| || ||| | || || ||| |||||||| || || Sbjct 809640 GTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCC 809699 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || || ||||||||||| ||||| || || || |||||| ||| Sbjct 809700 GCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCCTTC 809759 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||||| || | || | ||||| || || |||||| Sbjct 809760 ACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTT 809819 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 809820 TTGACAAAAATCTGCAT 809836 >seq1153 Length=2037154 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || ||||||||| || ||||| ||| || |||||||| || ||| ||| Sbjct 1923959 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1924018 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | |||||| ||||| || || || |||||||||||| ||| || ||||| | | Sbjct 1924019 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1924078 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | ||| || |||| ||| | ||||| || || || ||||| || | Sbjct 1924079 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 1924138 Query 127104 AAATCTGCATGG 127115 | |||||||||| Sbjct 1924139 AGATCTGCATGG 1924150 >seq1163 Length=8263949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||| || | ||||| ||||||||||| ||||| ||| Sbjct 3691915 TCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 3691974 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || || ||||| || ||| | |||| ||||| ||||| || || Sbjct 3691975 AAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692034 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| |||||| || | | ||||| ||||| | | ||||| Sbjct 3692035 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692094 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| ||||| |||||||| || || || ||||| Sbjct 3692095 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||| || | ||||| ||||||||||| ||||| ||| Sbjct 3692143 TCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 3692202 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || || ||||| || ||| | |||| ||||| ||||| || || Sbjct 3692203 AAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692262 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| |||||| || | | ||||| ||||| | | ||||| Sbjct 3692263 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692322 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| ||||| |||||||| || || || ||||| Sbjct 3692323 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||| || | || || ||||||||||| ||||| ||| Sbjct 3692371 TCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGA 3692430 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || || ||||| || ||| | |||| ||||| ||||| || || Sbjct 3692431 AAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692490 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| |||||| || | | ||||| ||||| | | ||||| Sbjct 3692491 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692550 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| ||||| |||||||| || || || ||||| Sbjct 3692551 TTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | |||||| || || ||||| ||||| || | || | | Sbjct 3693296 CGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCA 3693355 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || ||||| || |||||||| ||||||| || || ||||| ||||| || || || || Sbjct 3693356 TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 3693415 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || |||| | ||||| ||||| | | || || || | ||| | Sbjct 3693416 TCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATG 3693475 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || || ||||||||||| || |||||| Sbjct 3693476 GTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 3693511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491587172000