Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1181 118 1e-21 seq1153 100 3e-16 seq1163 84.2 2e-11 >seq1181 Length=949089 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||| ||||||||| ||||| || ||||||||||| || || || || |||| Sbjct 810080 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810139 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || || |||||||| ||||| | |||||||| | || | | |||||||| Sbjct 810140 TTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810199 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || |||| || | | |||||| || ||| || |||| ||||| || Sbjct 810200 CTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGT 810259 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| ||||| |||||||| Sbjct 810260 TTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||| ||||||||| ||||| || ||||||||||| || || || || |||| Sbjct 810536 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810595 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || || |||||||| ||||| | ||||||||| | || | | |||||||| Sbjct 810596 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810655 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || |||| || | | ||| || || ||| || |||| ||||| || Sbjct 810656 CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTGT 810715 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| ||||| |||||||| Sbjct 810716 TTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||| ||||||||| ||||| || ||||||||||| || || || || |||| Sbjct 810308 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810367 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || || |||||||| ||||| | |||||||| | || | | |||||||| Sbjct 810368 TTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810427 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || |||| || | | ||| || || ||| || |||| ||||| || Sbjct 810428 CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTGT 810487 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| ||||| |||||||| Sbjct 810488 TTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||| | |||| |||||| ||| ||||| || ||||| ||||| || Sbjct 810978 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811037 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || || || |||||||| || || | ||||||||| | || Sbjct 811038 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGA 811097 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || || || |||| || | | |||||| || ||| || Sbjct 811098 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCGACT 811157 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 811158 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| |||| ||||||||| |||||||| ||||||||||| || || || || |||| Sbjct 810764 CAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810823 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || || |||||||| ||||| | ||||||||| | || | | |||||||| Sbjct 810824 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810883 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || |||| || | | || || || || || |||| ||||||||| Sbjct 810884 CTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATGGT 810943 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || ||||| || ||||| Sbjct 810944 CTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 >seq1153 Length=2037154 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 |||||||| ||||| ||||| | |||||| | || || ||||| ||||||||||| || Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | ||||| || || | ||| | | |||||||||| |||||| ||||| || | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | || || | || || || | || |||||||| ||||| || ||||| || ||| Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 46586 ATTTGCAT 46593 || ||||| Sbjct 1924141 ATCTGCAT 1924148 >seq1163 Length=8263949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| || ||||| | ||| ||||| || || |||||||| | Sbjct 3693282 TGCCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAG 3693341 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | | || || || ||||| || || || ||||| || || || || | | Sbjct 3693342 AAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAG 3693401 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || || || |||||| |||| | | | ||||| | ||||| Sbjct 3693402 GAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCA 3693461 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 3693462 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 3693510 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| ||||| || | || || || || || ||||||||||| Sbjct 3692600 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 3692659 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || | || ||||||||||| |||| ||||| || || | || Sbjct 3692660 AGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692719 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| |||||| || || ||| | | | | ||||| | ||| || Sbjct 3692720 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3692779 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||||||||| || || || ||||| || |||||||||||| Sbjct 3692780 TCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227448506000