Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1163 113 3e-20 seq1181 100 2e-16 >seq1163 Length=8263949 Score = 113 bits (124), Expect = 3e-20 Identities = 169/235 (72%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| || | ||| |||||| || || || ||||||| Sbjct 3693056 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGG-- 3693113 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| ||||||||||| ||| | ||||| | |||||| ||||||| Sbjct 3693114 --AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGG 3693171 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCG-TCGCTACTGTGTCTGCGCT 39665 || | || |||||||| | | |||| | |||| || | ||| |||||| | | Sbjct 3693172 TGGAATTCCCTCTTTGTC-CTGAATTTTGGCCTTTA--CGTTTTCTATTGTGTCAGAGGC 3693228 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || || | || || ||||||||||| | ||| ||||| |||||||||||| Sbjct 3693229 TTCAACTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 3693283 Score = 102 bits (112), Expect = 6e-17 Identities = 166/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| || | ||| |||||| || || || || |||| Sbjct 3692600 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG-- 3692657 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| ||||||||||| ||| | ||||| | |||||| ||||||| Sbjct 3692658 --AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGG 3692715 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCG-TCGCTACTGTGTCTGCGCT 39665 || | || |||||||| | | |||| | |||| || | ||| |||||| | | Sbjct 3692716 TGGAATTCCCTCTTTGTC-CTGAATTTTGGCCTTTA--CGTTTTCTATTGTGTCAGAGGC 3692772 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | || || |||||||| || | |||||| |||||||| ||||| Sbjct 3692773 TTCAACTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| || | ||| |||||| || || || || |||| Sbjct 3692828 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG-- 3692885 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| ||||||||||| ||| | ||||| | |||||| ||||||| Sbjct 3692886 --AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGG 3692943 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCG-TCGCTACTGTGTCTGCGCT 39665 || | || |||||||| | | |||| | |||| || | | | ||||||| Sbjct 3692944 TGGAATTCCCTCTTTGTC-CTGAATTTTAGCCTTTA--CGTTTTCGATGGTGTCTGAAGC 3693000 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | ||||| |||||||| || | |||||| ||||| || ||||| Sbjct 3693001 TTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 >seq1181 Length=949089 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || |||||||| | |||| ||| ||||| ||||| ||||| | | Sbjct 811662 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 811721 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| |||| || || || |||| || |||||||||||||| | || Sbjct 811722 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGG 811781 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || ||| ||| | || | | ||||| | || || Sbjct 811782 ATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACT 811841 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||| || || || || || || || || ||||| ||||||||| Sbjct 811842 TCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 811889 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || ||||||||||| || ||| || || |||||||| || | Sbjct 810978 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811037 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| ||| | || ||||| | |||||| |||| || Sbjct 811038 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGA 811097 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| || || ||||| ||| | || | | ||||| | ||| ||| || Sbjct 811098 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGC-TTCGAC 811156 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| ||||||||||| || | ||||| || || || ||||| Sbjct 811157 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | | || ||||||||||| ||| |||||| || |||||||| || | Sbjct 809838 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAG-- 809895 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || | || || | |||||||||| | || || || | ||| || |||| | Sbjct 809896 AAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTG 809955 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCC 39669 | | ||||| ||||| ||||| ||| | || | | ||||| | ||||| | Sbjct 809956 GGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTT-CG 810014 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| ||||||||||| || | ||||| || || || ||||| Sbjct 810015 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||||| ||| |||||| || || |||||||| | Sbjct 811434 CCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAG-- 811491 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || | || || | |||||| || |||| || || | ||||||||| | || Sbjct 811492 AAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 811551 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||||| ||||| || | | | | ||||||| || | Sbjct 811552 GGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAA 811611 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| || || || || | ||||| || ||||||||||| Sbjct 811612 CTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGT 39568 ||||||||||| ||| ||| || || ||||| || || | ||| | || | || | Sbjct 810084 ACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAG--AAAGTGTACGACCGTCTT 810141 Query 39569 CCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGC 39628 | | |||||||||| | || || || | ||||| |||| || | ||||| ||||| Sbjct 810142 CAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCT 810201 Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | || | | ||||| | ||||| | || |||||||| |||||| Sbjct 810202 GAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTT-CGACTTCCAAAGTGATTGTT 810260 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| || || || ||||| Sbjct 810261 TTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGT 39568 ||||||||||| ||| ||| || || ||||| || || | ||| | || | || | Sbjct 810540 ACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAG--AAAGTGTACGACCGTCTT 810597 Query 39569 CCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGC 39628 | | |||||||||| | || || || | |||||| |||| || | ||||| ||||| Sbjct 810598 CAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCT 810657 Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | || | | || || | ||||| | || |||||||| |||||| Sbjct 810658 GAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTT-CGACTTCCAAAGTGATTGTT 810716 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| || || || ||||| Sbjct 810717 TTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363037971150