Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1163 149 6e-31 seq1153 127 2e-24 seq1238 96.9 3e-15 >seq1163 Length=8263949 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| ||||| || | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | ||||| | ||||||||||||||||| | || | Sbjct 3692995 AGACACCATCGAAAACG-TAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692937 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| |||| || | | || || |||||||| Sbjct 3692936 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 3692877 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | ||||| || |||| |||||| | |||| || Sbjct 3692876 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692828 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || || ||| | Sbjct 3692827 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3692768 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | || | ||||| | ||||||||||||||||| | || | Sbjct 3692767 TGACACAATAGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692709 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| |||| || | | || || |||||||| Sbjct 3692708 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGACTACA 3692649 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | ||||| || |||| |||||| | |||| || Sbjct 3692648 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692600 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| ||||| || | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | ||||| | ||||||||||||||||| | || | Sbjct 3691855 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3691797 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| |||||||| ||||| || | | || || || |||| Sbjct 3691796 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 3691737 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||| ||| | || || || || || Sbjct 3691736 ACATCCAAAAAGAATCCACACTCCACTTAGT 3691706 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| || |||| ||||| || | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| || ||||| |||||||| | || | Sbjct 3692083 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692025 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692024 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3691965 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || || |||| |||||| | |||| || Sbjct 3691964 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3691916 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||| || |||| ||||| || | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| || ||||| |||||||| | || | Sbjct 3692311 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692253 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692252 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692193 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || || |||| |||||| | |||| || Sbjct 3692192 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692144 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || ||||| || || |||| ||||| || | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| || ||||| |||||||| | || | Sbjct 3692539 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692481 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692480 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692421 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| ||| | || || || |||| |||||| | |||| || Sbjct 3692420 ACATTCAAAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692372 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || ||||| |||||||||||| | || || || ||| | Sbjct 3693282 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3693223 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||| | ||||||||||||||||| | || || Sbjct 3693222 GACACAATAGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3693164 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| ||| |||||||| |||| || | | || || ||| ||||| Sbjct 3693163 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAA 3693104 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || ||| | ||||| || |||| |||||| | |||| || Sbjct 3693103 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3693056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| ||||| || |||||||||||| | || || || || | Sbjct 3693510 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 3693451 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| || |||| || ||||| || ||||| | || ||| Sbjct 3693450 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 3693391 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || || | | || || ||||||||| Sbjct 3693390 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 3693331 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | ||||| ||| | || |||||| Sbjct 3693330 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCGT 3693295 >seq1153 Length=2037154 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| |||||||| ||| |||| || |||||| | Sbjct 1924148 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1924089 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| ||||||||||| | || ||| Sbjct 1924088 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 1924029 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| |||||||||||||| || | ||||| | ||| |||||| Sbjct 1924028 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 1923969 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 1923968 ATCCAAAA 1923961 >seq1238 Length=3292682 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || || |||||||||||||| || | || ||||||| || ||||| || Sbjct 3271985 TCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTT 3272044 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 |||||||| ||||| ||||||||||| ||||||| ||||| || ||||| || || Sbjct 3272045 AGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCG 3272104 Query 133039 ACCAGGCGCTCGCCGAACGTGGC 133061 || | || ||| ||||| || Sbjct 3272105 ACTACACGTTCGGGAAACGTAGC 3272127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163109152000