Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1540 280 1e-69 seq1533 197 1e-44 seq1169 113 3e-19 seq1527 87.8 1e-11 >seq1540 Length=5613228 Score = 280 bits (310), Expect = 1e-69 Identities = 799/1209 (66%), Gaps = 22/1209 (2%) Strand=Plus/Plus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 |||||||||| || | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 2650963 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 2651022 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || || | |||| | || || ||||||||||||| || | || || | Sbjct 2651023 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 2651082 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 |||| | | ||||| ||| | | ||||||||| || || || || || ||||| Sbjct 2651083 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAA-CGTCTGG 2651141 Query 517455 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | ||| || ||||| ||||| || | ||| | | ||||||||| || || || Sbjct 2651142 GTCTGTTTTGTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 2651201 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 2651202 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGA---CTTCC 2651258 Query 517574 TCAG-TTTG--ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 |||| |||| || ||||| || || |||| || |||||||| |||||||| || Sbjct 2651259 TCAGATTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCG 2651318 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 517689 || ||||||| | || || |||| || || || || |||| ||||| || || | Sbjct 2651319 TCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTTCT-G 2651377 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | || || || | || || || || |||| || || || || || | |||||| Sbjct 2651378 AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATC 2651437 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 || || | ||| | | | ||||| |||||||| ||| |||||||| || | Sbjct 2651438 CATCTTGGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAGATCAGC 2651497 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 517867 || || || |||||| | |||||||| || || | || || ||||| || || ||| Sbjct 2651498 GCAGAGCTCCTCGAATCTGGCTCTAGT--GACCGATGTATAGAAGTCAATCCCCTCAAAC 2651555 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 || ||||||| ||||| | | || ||||| || | | | || || | || Sbjct 2651556 AATGAATCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCTCTCG 2651615 Query 517928 CATGCTGTCCTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTT 517986 || || ||||||| | || | ||| | | | | || ||| |||| | || ||||| Sbjct 2651616 CAAGCAGTCCTTAAACGTCTCAGAGCTCTCTTGTTACTG-CTCAGATCTTTCTTGTATTT 2651674 Query 517987 TCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || ||||| |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 2651675 CCTTTTGAATTCTT--GCACAAAATGGTTCACCATTCGGTTATCAAAGTCCTCACCACCA 2651732 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | ||| | | | |||| ||| | ||||| || | | || || Sbjct 2651733 AGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAATC 2651792 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164 | || ||| ||| |||||||||| ||||| || || |||||| |||| | Sbjct 2651793 GACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAGCC 2651852 Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||||||||||||||| || | ||||| || || || || || || ||||| | ||| Sbjct 2651853 TTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAACG 2651912 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||| || ||||| || || |||||||| || || || || ||||| Sbjct 2651913 TTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAATAA 2651972 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| || ||||||| |||| |||||| | || || ||||| | Sbjct 2651973 GCTGGCACAGTGATGACGGCATTTGTTATAGTTTTACCCAGGTACGCCTCCGCCGTCTCC 2652032 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTCATT 518403 ||||| || | || | ||| || || | | || |||||| | | ||| ||| Sbjct 2652033 TTCATCTTCGTCAAGACCATAGAGGACACCTCCTC-GGGGAAGAAAGTCTTCATCTCACC 2652091 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 | ||| || |||| | | |||||| ||| |||| | || | |||||||||| Sbjct 2652092 CTTATAAGACACTTTGATTTTTGGTTTGCCGCCATCATTGACCACCGTGAATGGCCAGTG 2652151 Query 518464 TTTCATATC 518472 |||||| || Sbjct 2652152 TTTCATGTC 2652160 >seq1533 Length=2891333 Score = 197 bits (218), Expect = 1e-44 Identities = 712/1099 (65%), Gaps = 16/1099 (1%) Strand=Plus/Plus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || |||||||| || || || ||| || || || || |||| | ||||| ||| Sbjct 1440656 TTGGTAATAGTGATCTTGTTCTCCTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAGA 1440715 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| || ||||| | ||| || || || ||||| ||||| || || | | || ||| Sbjct 1440716 ATACCGTTCGCATCGATATCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGGT 1440775 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || || | | ||| | ||||| ||||||||| || || | || ||| Sbjct 1440776 GGAATACCGCTAAGCTCGAATTTGCCCAGTAAATTATTATCCTTGGTCATGGCGCGCTCA 1440835 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||| | | || || || | | |||||| || | ||||||||||| | Sbjct 1440836 CCCTCGTATACCTGAATCAACACGCCGGGTTGATTGTCGGCGTAAGTTGTAAAGGTTTGA 1440895 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || || || || || || || | ||||| |||||| | |||||| || Sbjct 1440896 GTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATAAGCGCGGTCATGACACCACCGGCA 1440955 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| ||||| || ||||||||||| | | | | | ||| | | || Sbjct 1440956 GTCTCAATACCTAGAGAGAGCGGAGTGACATCGAGCAAAAGCAAGTCTTGCACCTCCTC- 1441014 Query 517574 TCAGTT-TGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 | | || | ||| ||||| |||| || || | || || || ||||| ||||| |||| Sbjct 1441015 TGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGCCACAGCCTCAT 1441073 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTT 517690 ||||||| | || || || || | ||| ||||||||||| | ||| | || || | Sbjct 1441074 CAGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCTTGCAGGAGCTTCT-GA 1441132 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 | || ||||| || | || ||||| ||||| || || || || | || | ||| ||| Sbjct 1441133 ATTTTGGGAATTCGCGTAGAGCCTCCGACTAAAACGATATCGTGGATTTGAGCTTTGTCC 1441192 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 | || | || | |||||||||||||||||| | | || | || | Sbjct 1441193 ATCTTGGCGTCGCGCAGCGACTTTTCAACGGGTTCAAGAGTACCACGGAAGAGATCGGCG 1441252 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 517870 || ||||| ||||| ||||| || | | | | |||||||||| || |||| Sbjct 1441253 CAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCAATTCCCTCATACAAC 1441312 Query 517871 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 517930 ||||| | || || | | || || || || || || | || || |||||||| || Sbjct 1441313 GAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTGCGCTTGGCACGTTCGCAG 1441372 Query 517931 GCTGTCCTTAGTCTTCGTAAG---GCTTTTGCT-GATTGATTCAAATCTGTTTTATATTT 517986 ||||| | || | || ||| || ||| | || | ||||||| | || ||||| Sbjct 1441373 GCTGTGCGAAGACGACG-AAGTGCGCGTTTATTCGA---AGTCAAATCCTTCTTGTATTT 1441428 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 | |||||| || | || | | || | || |||||||| || ||||| ||||| Sbjct 1441429 ACGCTTGAATTCCTGTACGAAGTGATTGACCATGCGGTTATCAAAGTCCTCACCACCCAA 1441488 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | ||||| ||| | ||| | | || | ||| | |||||||||| || || | | Sbjct 1441489 ATGAGTATCTCCCGCCGTGGACTTGACCTCGAAGATACCATCTTCAATAGTCAGGATGGA 1441548 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 || || || |||||||| | |||||| ||||| || || || | | | || Sbjct 1441549 CACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTTCGCTCGCCG-GTGGCTT 1441607 Query 518167 T-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 | || || |||||||| |||| || || || || || || || ||||| | ||| |||| Sbjct 1441608 TCTTGTCGAGACCATATGCAATTGCGGCGGCGGTGGGCTCGTTGATAATACGCAATACAT 1441667 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | | || | || | || || || || || || || | || || ||||| || || | Sbjct 1441668 TTAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAAG 1441727 Query 518286 CAGGAACAGTAATAACGGC 518304 | || || || || || || Sbjct 1441728 CGGGGACGGTGATCACAGC 1441746 >seq1169 Length=4285202 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | ||||| |||| ||||| || |||||||||||||| | Sbjct 2103222 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTAC 2103163 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | |||||| | |||||||| || |||||||| || ||||||| ||| ||||| Sbjct 2103162 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATC 2103103 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||| || || ||||| ||||| |||| ||||| Sbjct 2103102 ATTAAAATACGCTGGTACAGTGATAACAGCATTCTTTACT 2103063 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || ||||| || ||||| |||||||||||||||| |||||||| || || ||| Sbjct 2103200 CCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTCAATCCAGCA 2103141 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| || | ||||||||||| ||||||||||| Sbjct 2103140 ATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTG 2103081 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 2103080 ATAACAGCATTCTT 2103067 >seq1527 Length=1521549 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| || ||||| | ||| | |||||| ||||||| |||||||| || | ||||| || Sbjct 422758 AGGAAAGGAAGGCAGGATTCGTGGAAATCTGATGGGTAAACGTGTGGACTTCTCTGCGCG 422699 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 ||| ||||| ||| ||||||||||| | | | || |||| || || || | | ||| Sbjct 422698 TACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGCGCAGTAT 422639 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 || ||||||| || || |||||| || || Sbjct 422638 AGCGCAAAATCTGACATTCCCCGAAATCGTGAC 422606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780745483894300