Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1533 351 1e-91 seq1540 291 1e-73 seq1492 89.7 7e-13 seq1169 87.8 2e-12 >seq1533 Length=2891333 Score = 351 bits (388), Expect = 1e-91 Identities = 875/1314 (67%), Gaps = 26/1314 (2%) Strand=Plus/Plus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||||| || | ||||| |||| | ||||| || ||||| || || || || | | Sbjct 1440509 TCGACTGTGCTCTTCATGTTGA-AGCAGTAAGACTCAAGACCGTTTTTGGCAGAGATCGT 1440567 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | | ||| || |||||| || ||||| || || | ||||| ||||||| Sbjct 1440568 TTCCTTCTGCTTCTCGTCTTCACTGCGGTATTTTTCTGCCTCGTTCACCATTCTTTCAAT 1440627 Query 6616 GTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGA 6675 || || || | || ||||| || || ||||| || ||||| | || || | Sbjct 1440628 ATCCTCCTTGCTGAGTCGACCCTTGTCGTTGGTAATAGTGATCTTGTTCTCCTTGCCAGT 1440687 Query 6676 GGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATT 6735 | ||| || | || ||||| | |||||| || ||||| | ||||||| | || | Sbjct 1440688 AGACTTGTCCACGGCGGAGACATTGAGAATACCGTTCGCATCGATATCGAACGTCACCTC 1440747 Query 6736 AATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAA 6795 ||| || || || | ||||| | ||||||||| | | || ||| | || ||||| Sbjct 1440748 AATCTGAGGAACTCCACGAGGTGCTGGTGGAATACCGCTAAGCTCGAATTTGCCCAGTAA 1440807 Query 6796 ACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTG 6855 | | |||||| | | | | || ||||| || || || | ||| ||| | ||||| Sbjct 1440808 ATTATTATCCTTGGTCATGGCGCGCTCACCCTCGTATACCTGAATCAACACGCCGGGTTG 1440867 Query 6856 ATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGG 6915 ||| || |||| ||| |||| | ||| | || || || ||||| ||| Sbjct 1440868 ATTGTCGGCGTAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTCCTCTT 1440927 Query 6916 AATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC 6975 ||||| || |||||| | |||||| ||| || | || ||||| || || || || || Sbjct 1440928 AATAAGCGCGGTCATGACACCACCGGCAGTCTCAATACCTAGAGAGAGCGGAGTGACATC 1440987 Query 6976 CAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 | | | || |||||| || || ||||| ||||| || || || || Sbjct 1440988 GAGCAAAAGCAAGTCTTGCACCTCCTCTGATTTATCACCGTGCAAGATAGCCGCCTGTAC 1441047 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | ||| |||||||| || |||||||| || || || | ||| || || ||||| || || Sbjct 1441048 TGCCGCGCCGTATGCCACAGCCTCATCAGGATTGATAGATTTGTTGAGCTCTTTGCCATT 1441107 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 ||| | || | | | |||||||| || ||||| || || || ||||| ||||| Sbjct 1441108 GAAAAAGTCTTGCAGGAGCTTCTGAATTTTGGGAATTCGCGTAGAGCCTCCGACTAAAAC 1441167 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTC 7215 ||| || | | || | ||| || ||||| | ||| || || | ||||| || ||||| Sbjct 1441168 GATATCGTGGATTTGAGCTTTGTCCATCTTGGCGTCGCGCAGCGACTTTTCAACGGGTTC 1441227 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 | | |||||| | || || |||||||| ||||| || ||||| ||||| || Sbjct 1441228 AAGAGTACCACGGAAGAGATCGGCGCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGT 1441287 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA 7335 |||||||||| || || || |||||||| || || ||| | | || | | || || Sbjct 1441288 GTAGAAATCAATTCCCTCATACAACGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGA 1441347 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || ||||| || || || || || || || | ||||||||| || || ||| Sbjct 1441348 CAGGGTGCGCTTGGCACGTTCGCAGGCTGTGCGAAGACGACGAAGTGCGCGT---TTATT 1441404 Query 7396 GGAAAT---ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAG 7449 ||| | ||| ||||| | |||||| || || || | |||||| | || | | | Sbjct 1441405 CGAAGTCAAATCCTTCTTGTATTTACGCTTGAATTCCTGTACGAAGTGATTGACCATGCG 1441464 Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 | ||| || || ||||||||||| || ||||| ||||| || | ||||| || || Sbjct 1441465 GTT---ATCAAAGTCCTCACCACCCAAATGAGTATCTCCCGCCGTGGACTTGACCTCGAA 1441521 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 |||||| ||||||| | | | || || || || || |||||||| || ||||| || Sbjct 1441522 GATACCATCTTCAATAGTCAGGATGGACACGTCGAAAGTGCCACCACCGAGATCAAAGAT 1441581 Query 7570 GAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCG 7625 || ||||| ||| ||| | || ||||| |||||||| || || || || || | Sbjct 1441582 AAGGACGTT----TCGCTCGCCGGTGGCTTTCTTGTCGAGACCATATGCAATTGCGGCGG 1441637 Query 7626 CCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTC 7684 | || || || || |||||||| || ||| || | ||| | || || | || || || Sbjct 1441638 CGGTGGGCTCGTTGATAATACGCAATACA-TTTAAGCCCGAGATGGTACCAGCGTCCTTG 1441696 Query 7685 GTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744 || || || || ||||| ||||| ||||| || ||||| || | || |||| ||||| Sbjct 1441697 GTTGCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCGTTGGTGACA 1441756 Query 7745 TTCTTACCGAGATACGATTCCGCGATATCTTTCA-TTTTGGTAAGAACCATCGA 7797 |||| || | || | || || | || |||| |||| |||| |||||||| Sbjct 1441757 GTCTTGCCTAAGTATGCCTCTGCAGTCTCCTTCATTTTTACTAAG-ACCATCGA 1441809 Score = 114 bits (126), Expect = 2e-20 Identities = 138/187 (74%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| ||| ||||| || ||||| || || |||||| Sbjct 1443279 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGATTCTTGGCGGCGTCTCCAATGAGACGT 1443338 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || ||||||| || || || || ||| ||||| || || || || ||||| || Sbjct 1443339 TC---GGTTTCCGTGAAGGCCACATAGCTTGGCGTCGTGCGGTTGCCCTGATCGTTGGCG 1443395 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || | ||| ||| ||||||| ||||| || || ||||| || | ||| Sbjct 1443396 ATAATCTCGACCTTGCCGTGTTGAAAGACGCCAACGCAGGAGTAAGTTGTGCCAAGATCG 1443455 Query 8138 ATACCGA 8144 ||||||| Sbjct 1443456 ATACCGA 1443462 Score = 86.0 bits (94), Expect = 8e-12 Identities = 162/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || || || || || || || || || ||||||||| | ||| Sbjct 1392001 ATCGAAATCTTCGCCTCCTAAATGAGTGTCACCATTAGTGGCAACGACTTCAAACACACC 1392060 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| | | ||| || ||||| || ||||| ||||||||||| | ||||| Sbjct 1392061 GTTGTCAATAGTGAGCAAACTGACGTCAAAAGTGCCACCGCCCAGGTCAAACACCAGTAC 1392120 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| || || || | ||| || || || || || || || || || Sbjct 1392121 GTTTTTCTCGCCGTCT---TTTTTGTCCAAACCATATGCAATTGCAGCGGCAGTCGGCTC 1392177 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 |||||||| | | | || ||||| ||| || | ||||| || || || ||| Sbjct 1392178 GTTAATAATTCTCATTACGACCAAGCCAGAAATTGTCCCAGCATCCTTGGTGGCCTGT 1392235 >seq1540 Length=5613228 Score = 291 bits (322), Expect = 1e-73 Identities = 740/1117 (66%), Gaps = 24/1117 (2%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| || || | |||||| | || | ||||| || ||| || ||||| | | Sbjct 2650963 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 2651022 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 |||| ||||| | |||||| | ||||| | | | ||||| ||| | || | || | Sbjct 2651023 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 2651082 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT- 6883 | |||||||| | || ||| | ||||||||||| || | ||| | || Sbjct 2651083 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAACGTCTGGG 2651142 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 ||| | || | ||| || ||||| || ||| ||| | | |||||||| || || Sbjct 2651143 TCTGTTTT-GTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 2651201 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAAC------A 6997 || || | || | || | || |||||||||| || | || ||||| || | Sbjct 2651202 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGACTTCCTCA 2651261 Query 6998 GATTCGTTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 |||| || || || ||| |||| || || || | || || || || || || Sbjct 2651262 GATTTGTCGCC-------GTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGC 2651314 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC-GA--TAACAT 7113 ||| || || ||||| | ||| |||||||| || |||||||| |||| || |||| | Sbjct 2651315 CTCGTCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTT 2651374 Query 7114 TTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA 7173 || |||||| || |||| || || |||||||| | |||||| | |||| | Sbjct 2651375 CTG---AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGC 2651431 Query 7174 TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA 7233 |||||| ||||| | |||| ||| | ||||| || ||||| | | | | |||| Sbjct 2651432 TTTATCCATCTTGGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAG 2651491 Query 7234 GTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTC 7293 || || || ||||| || | || | || | ||||||||||| |||| || || Sbjct 2651492 ATCAGCGCAGAGCTCCTCGAATCTGGCTCTAGTGACCGATGTATAGAAGTCAATCCCCTC 2651551 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 | || |||||||| |||||| | | || | || ||| ||||||| |||||| | Sbjct 2651552 AAACAATGAATCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCT 2651611 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 ||| || || || | |||||| | || || | | ||||| | | ||||||||| | Sbjct 2651612 CTCGCAAGCAGTCCTTAAACGTCTCAGAGCTCTCTTGTTACTGCTCAGATCTTTCTTGTA 2651671 Query 7414 TTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 ||| | ||| || |||| || | || || | | || ||| || || ||||||| Sbjct 2651672 TTTCCTTTTGAATTCTTGCACAAAATGGTTCACC-ATTCGGTTATCAAAGTCCTCACCAC 2651730 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 | | || || || || || || | ||| ||||| |||||||| | || || | | | Sbjct 2651731 CAAGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAA 2651790 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 ||| || ||||| ||||||||||||| |||||| || || || ||| | || | | Sbjct 2651791 TCGACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAG 2651850 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGAC 7652 || ||||| ||||| || || || || || || || || || || || || | ||| Sbjct 2651851 CCTTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAA 2651910 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 ||| | ||||||||||| | ||||| || |||||||||| || || || || || | Sbjct 2651911 CGTTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAAT 2651970 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | || || || || | ||| || | || | | ||||| || |||| ||||| | | Sbjct 2651971 AAGCTGGCACAGTGATGACGGCATTTGTTATAGTTTTACCCAGGTACGCCTCCGCCGTCT 2652030 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | ||||| || || | ||||| || || | ||| || Sbjct 2652031 CCTTCATCTTCGTCAAGACCATAGAGGACACCTCCTC 2652067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 22431 AAAAACGTGT-AAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| ||| ||||||||||| ||||| ||||| || || ||||| |||||| ||| Sbjct 1331847 AAAAATCTGTGAAATTTTATCATGCATCAACATCCGAACTTTACGGCAAAGTACTGGAAG 1331906 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||| |||||| ||||| ||||| || || || |||||||| Sbjct 1331907 TTCCACAAACTGAAAAGACACCATTTTATCCACGCTCTCCATATGG 1331952 >seq1492 Length=1263116 Score = 89.7 bits (98), Expect = 7e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCG 106014 |||| |||||| || |||||||||| ||||| | || | | || || || | Sbjct 356900 GTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCAGACAAATAATTA 356959 Query 106015 TATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAG 106074 |||||||| | ||| | |||||| || | | |||||||||||| ||| || | ||| | Sbjct 356960 TATGTTTCTATGACTTTATCAATGTCATTTTCATGAATACCAACAGCTACTCTCATCAAC 357019 Query 106075 AGATATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTCAAGT 106134 | || ||| || | || | || | ||| | |||||| | || || | | | ||||| Sbjct 357020 ATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGGTAACTTCTCTCAAGC 357079 Query 106135 GTTTTTAAACCAAAATACCCAAACTCAAAATCACGTTCG 106173 ||||| ||||||| ||| | | | |||||||| ||| Sbjct 357080 GTTTTAAAACCAATATAATTATAATTGAAATCACGATCG 357118 >seq1169 Length=4285202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||||| | || || || | || || || |||||||||||||| | ||||||| ||| Sbjct 2103209 TTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTC 2103150 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 | |||||||| | ||||||||||| ||||||||||| ||||| ||||| || || Sbjct 2103149 AATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCT 2103090 Query 7718 GGGACCGT 7725 || || || Sbjct 2103089 GGTACAGT 2103082 Score = 82.4 bits (90), Expect = 1e-10 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 6678 CCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAA 6737 |||||||| || ||||| || ||||||||||||||| | |||||| |||| | | Sbjct 2104583 CCTTATCTCTGGCTGATACATGCACAATACCATTTGCATCGATATCGAATGTTACTTCTA 2104524 Query 6738 TTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAAC 6797 |||||||| |||||| ||||| | ||||||||| | | |||| || || | Sbjct 2104523 TTTGTGGTACACCCCTTGGTGCAGGTGGAATACCAACAAGACTAAATTGTCCTAGAAGCT 2104464 Query 6798 TGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAAT 6840 ||||||| | ||| | | || || |||| || |||||||| Sbjct 2104463 TGTTATCACTAGCCATTTCTCGCTCGCCTTGATGAACTTTAAT 2104421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120494302000