Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1238 89.7 6e-13 seq1538 84.2 3e-11 >seq1238 Length=3292682 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 |||| || || ||||| || || || |||||| || || ||||||| ||||| ||||| Sbjct 3271983 CTTCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 3272042 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 |||||||||| ||||| ||||| ||| |||||||| ||||| || || || | Sbjct 3272043 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATG 3272102 Query 119635 CGAATAGACGCTCAGCAAA 119653 ||| || ||| || | ||| Sbjct 3272103 CGACTACACGTTCGGGAAA 3272121 >seq1538 Length=2636714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 168442 GGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTC 168501 ||||||| ||||| | |||||| || | | | | ||| | ||||| | |||||| Sbjct 1207165 GGAAATATGCCATATTTATCTCTGCCTATGGAAGCAATACCGGATACAGCCATTGTTTTC 1207106 Query 168502 GCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCA--GACTGTGCCGTACCAGCTT 168559 |||||||| ||||| |||| |||||||| || ||||| || | ||| || || || | Sbjct 1207105 GCTGAATCTCCCTCAGTCAAAATGAGTGTGCA--TTCCAGTGATTTTGCAGTTCCTGCAT 1207048 Query 168560 TGTTCGCATCGTCCAATTTGGGGATACCA 168588 || ||||| || |||||||| |||||| Sbjct 1207047 CATTGGCATCTTCTAATTTGGGTATACCA 1207019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964588590000