Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1288 111 2e-19 >seq1288 Length=1952040 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||||| || |||||||| || |||| ||||| ||| || || | | Sbjct 1343984 TCGTGTCTGATGATCACGTATCCATCGACGAATGGAGTATTCGAAGAAACGATTAATGAT 1344043 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 ||||| || || || || | ||||||||| |||||| | || ||||| ||| | ||| Sbjct 1344044 ATATGCAACATGGTGCACAACGCTGGTGGTCAAGTATATTTGGACGGTGCCAATATGAAT 1344103 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTA 159720 || || || ||| | ||| |||| ||||| || || | ||||| || || Sbjct 1344104 GCTCAAGTTGGTTTGTGTCGACCTGGTGATTATGGCAGCGACGTGTCACATCTCAATCTA 1344163 Query 159721 CATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || ||||| ||||| || || ||||| || ||||| | ||||||||||| || Sbjct 1344164 CATAAAACGTTCTGCATTCCTCACGGGGGTGGCGGACCTGGTATGGGTCCTATTGGAGT 1344222 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 158422 GACAT-TGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCA 158480 ||||| ||| || |||| | ||| | ||||| |||||| | ||||| || || ||||| Sbjct 1342693 GACATATGC-GTGGGTACGAGCCAACGTTTTGGGATTCCTCTTGGATATGGTGGACCTCA 1342751 Query 158481 TGCTGCATTCTTTGCAA--CAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTA 158538 |||| |||||||| | |||| ||| | | | || ||||||||||| || Sbjct 1342752 CGCTGGGTTCTTTGCGTGCCGACAG-CAATTGGT-GCGCTTAATGCCTGGCAGAATGATA 1342809 Query 158539 GGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 158598 ||| | |||| | | || | | || || | ||||| || || || | ||| Sbjct 1342810 GGTGTTACGAGAGATTCCAATGGAGAGGACGCTTATCGTTTAGCCCTTCAAACGCGCGAG 1342869 Query 158599 CAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 || |||||||||||||| ||||| ||||| || || || || |||||||| | || ||| Sbjct 1342870 CAACATATCAGAAGAGATAAAGCCACCAGCAATATTTGTACCGCACAAGCGTTACTCGCT 1342929 Query 158659 AATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAAGA 158718 || ||||| | | ||||| | ||| ||||| | | ||| ||| | || ||||| Sbjct 1342930 AACATGTCCGCAATGTATGCGGTATACCATGGACCTCAGGGAATACGAGACATTGCAAGT 1342989 Query 158719 AGA 158721 ||| Sbjct 1342990 AGA 1342992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588039806508000