Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1163 129 4e-25 seq1153 116 2e-21 seq1181 100 2e-16 >seq1163 Length=8263949 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| ||||| ||| ||||||||||||||| || || | Sbjct 3693054 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGG 3693113 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| |||| |||| ||||| ||||| || || || || || || || | | Sbjct 3693114 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3693173 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||| || || ||| | |||| | ||| ||| |||| Sbjct 3693174 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3693233 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 3693234 CTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 3693282 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| ||||| ||| ||||||||||||||| ||||| | Sbjct 3692598 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692657 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| |||| |||| ||||| ||||| || || || || || || || | | Sbjct 3692658 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692717 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||| || || ||| | |||| | ||| ||| |||| Sbjct 3692718 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3692777 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct 3692778 CTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| ||||| ||| ||||||||||||||| ||||| | Sbjct 3692826 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692885 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| |||| |||| ||||| ||||| || || || || || || || | | Sbjct 3692886 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692945 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||| || || ||| | | || | || || || | Sbjct 3692946 GAATTCCCTCTTTGTCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 3693005 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| |||||||| || |||||||| ||||| || || ||||| Sbjct 3693006 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| ||||| ||| |||| || || || ||||| ||||| Sbjct 3693319 TTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAA 3693378 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||||| || ||| | || | || || || || ||||| |||||| Sbjct 3693379 GATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATT 3693438 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || || || || | ||| ||||||||||| ||||| || || || Sbjct 3693439 TTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTAC 3693498 Query 34970 AAAGATCTGCAT 34981 |||||| ||||| Sbjct 3693499 AAAGATTTGCAT 3693510 >seq1153 Length=2037154 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || ||||| || || || | | ||| |||| ||||||||||| ||||| || | Sbjct 1923959 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1924018 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| || || ||| |||| | ||||||||||| ||||| ||||| || Sbjct 1924019 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATT 1924076 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| |||||| || |||| ||| |||||||| ||||| || || ||||| Sbjct 1924077 CTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCAC 1924136 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 1924137 GAAGATCTGCAT 1924148 >seq1181 Length=949089 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34784 TGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||| |||||||||||||||||| || ||||| | || | || || || |||||||| Sbjct 811463 TGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCC 811522 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 ||||| || | || ||||| ||| | || | || || ||||| ||| || || Sbjct 811523 AGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTT 811582 Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 ||| | | |||| || |||||||| || | || ||||| ||||| || || || Sbjct 811583 GACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGT 811642 Query 34964 CTTCACAAAGATCTGCAT 34981 || |||||||||||||| Sbjct 811643 TTTGACAAAGATCTGCAT 811660 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | |||| ||| || ||||| || ||||| ||||| | || | Sbjct 810761 CCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACC 810820 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || || ||||| ||||| || || | | |||||||| | || | || ||||| Sbjct 810821 GTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTT 810880 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || |||||| || || || | || |||||||| || | || Sbjct 810881 GTCCTGAATTTTGGCTTTGAC--ATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTG 810938 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || | ||||| ||||| ||||||||| Sbjct 810939 ATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCATA 810977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | |||| |||||||||||| |||||||| ||||| | || | Sbjct 809849 CCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAAAGTGTACGACC 809908 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || || ||||| ||||| || || | | || ||||| | || | || ||||| Sbjct 809909 GTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTT 809968 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || |||||| || || |||| || || || || || | || Sbjct 809969 GTCTTGAATTTTGGCTTTGAC--ATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTG 810026 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || || || || ||||| || |||||| Sbjct 810027 ATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810065 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| |||||||||||| |||||||| || | | ||| |||| || ||||| Sbjct 809633 GTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTG 809692 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || ||||||| ||| || || | || | || || || || ||| || Sbjct 809693 CTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTT 809752 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | || ||| | | |||| || || || || || | || || ||||| || || Sbjct 809753 CGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGT 809812 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || ||||| ||||||||| Sbjct 809813 GAGAGTTTTGACAAAAATCTGCATA 809837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||||||||| || | |||| ||| |||||||| || ||||| ||||| | || | Sbjct 810078 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCG 810137 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || || ||||| ||||| || || | | ||||||||| | || | || |||||| Sbjct 810138 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTG 810197 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || ||| || |||||| || || |||| || || || || || | || | Sbjct 810198 TCCTGAATTTTGGCTTTGAC--ATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGA 810255 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || || || || ||||| || |||||| Sbjct 810256 TTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||||||||| || | |||| ||| |||||||| || ||||| ||||| | || | Sbjct 810306 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCG 810365 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || || ||||| ||||| || || | | ||||||||| | || | || |||||| Sbjct 810366 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTG 810425 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || ||| || |||||| || || |||| || || || || || | || | Sbjct 810426 TCCTGAATTTTGGCTTTGAC--ATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGA 810483 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || || || || ||||| || |||||| Sbjct 810484 TTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810521 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | |||| ||| |||||||| || ||||| ||||| | || | Sbjct 810533 CCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACC 810592 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || || ||||| ||||| || || | | |||||||| | || | || ||||| Sbjct 810593 GTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTT 810652 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || |||||| || || |||| || || || || || | || Sbjct 810653 GTCCTGAATTTTGGCTTTGAC--ATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTG 810710 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || || || || ||||| || |||||| Sbjct 810711 ATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || ||| |||||||| |||||||| ||||| | || |||| || Sbjct 810995 AACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTC 811054 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || |||| | |||||||| | || | || ||||| || Sbjct 811055 AAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGAATTCCTTCCTTATCTTG 811114 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| || || |||| || || || || || | || || ||| Sbjct 811115 AATTTTGGCTTTGAC--ATTCTCAATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTT 811172 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || || || ||||| || |||||| Sbjct 811173 TTACCGGTAAGCGTTTTAACAAAAATTTGCATA 811205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||| ||||| || | || ||| |||||||| |||||||| ||||| | || | Sbjct 811217 CCTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACC 811276 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || || ||||||||||| || || | || ||||| || | || | || || || Sbjct 811277 ATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTT 811336 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 || ||| || ||||| || || || | || ||||||| || | || Sbjct 811337 GTATTGAATTTTGGCCTTGAC--ATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTG 811394 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||| || || || || ||||| |||||||| Sbjct 811395 ATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 811432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627467468400