Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1238 114 1e-20 seq1492 107 2e-18 >seq1238 Length=3292682 Score = 114 bits (126), Expect = 1e-20 Identities = 145/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||||||||||||||| || || ||||| || || ||||| | |||||| Sbjct 3273267 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 3273326 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | ||||| | ||||| || | | ||| |||||||| || ||||| | Sbjct 3273327 GAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAA 3273386 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT---A 19431 || |||||||||||||| ||||| |||||| |||| ||||| || ||| | | | Sbjct 3273387 GCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTAGTTTTTCA 3273446 Query 19432 TTCCAATCATTAATATCTT 19450 ||||| || || | |||| Sbjct 3273447 TTCCAGTCCTTCTTGTCTT 3273465 >seq1492 Length=1263116 Score = 107 bits (118), Expect = 2e-18 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| ||||| |||||||||||| | ||| | | ||||||||| ||||| Sbjct 355193 ATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGT 355252 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||| ||||| || ||||| || ||||| ||||| || || || || || || ||||| | Sbjct 355253 ATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGG 355312 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | ||| | |||||||||||| | ||| |||| | ||| Sbjct 355313 TGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCA 355372 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||| | || || || ||| ||||| | ||||||||| ||||| Sbjct 355373 ATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 355420 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| || |||||||| | ||| || | ||||| |||||||||||||| ||||| Sbjct 356503 CCAATATTTCTCTTAAGTTCCAAAAAATCGAAAATATCGGCATGCCATGGTTCCAAATAA 356562 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | | || |||| ||||||||| |||||||| | ||| |||| ||| ||| Sbjct 356563 ATAGCAAATGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAAATGGCCATATCATTA 356622 Query 48393 TA-AACTCTTAACATTGGGACAATACCATT 48421 || |||| |||| || | || | |||||| Sbjct 356623 TACAACT-TTAAAATGGAAACCAAACCATT 356651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || ||||| ||| ||| | ||| | | |||||||| ||||| || ||||| |||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || || || || | ||||||||||| || || ||| || || || ||| ||| Sbjct 356939 TATCGTTCAGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 356998 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || ||| | ||| ||||||| |||||| || || || || || ||| |||||| Sbjct 356999 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 357058 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 | || || | | || | ||||||||||||| ||| || || ||||| Sbjct 357059 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA 357109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| || |||||||| |||||||| ||| || |||| |||||| ||||| || Sbjct 354881 ATATGAACGTTTAGAGATTGCGACTGATCAACAAAAGCTCCTCGATCAGCCGCCATTTCG 354940 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | ||| || |||| ||||||||||| || || || |||| Sbjct 354941 AGAATTACTTTTTGCGGTATCTCCCAGACCGTCTTGTAAA 354980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/184 (70%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||| ||| | || | || |||||||||| ||| |||||||| || || ||| | Sbjct 355888 TAACGAACATGTTGACAGCGATAGATGCTAAATTGCATACAGCGACTTCTCCAGGACCCG 355947 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 |||| || ||||||| || | || | ||||||| ||| || | || ||||||| Sbjct 355948 AGTATTCAATAATTTCAGTGCACAAGTTGCTGCATTTGACAGTGCCTATATGCTGATGAT 356007 Query 47983 T--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 | ||| ||| || || |||||||||||| |||||||||||||||||| || Sbjct 356008 TCGATTTTCG--GTTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTG 356065 Query 48041 AGAT 48044 ||| Sbjct 356066 GGAT 356069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097909142000