Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1181 167 4e-36 seq1163 159 6e-34 >seq1181 Length=949089 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || |||| |||||| |||| || || |||||||||||| Sbjct 810975 ATACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCA 811034 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | |||||||||||| || ||||| ||||| || || ||| Sbjct 811035 GAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGA 811094 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||||| ||| | ||| ||| || || || | || Sbjct 811095 GGAATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCG 811154 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | ||| || |||||||| || |||||||| ||||| |||||||| Sbjct 811155 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| | ||||||||| || || | ||||| ||||| |||||||||||||||| Sbjct 809610 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 809669 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| |||| || || || || ||||||| ||| |||||||| ||||| Sbjct 809670 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 809729 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| ||||| | || | ||| ||| || || |||| || || Sbjct 809730 ATGCCTTCTTTATCTTGAATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 809789 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || || ||||||||||| || || ||||| ||||| || ||||| Sbjct 809790 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 809836 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | | | ||||| |||||| |||| || || |||||| Sbjct 811196 AATTTGCATACCACCGCGAAGCCTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATT 811255 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | || | | ||| || | |||||||||||| || || |||||||| || Sbjct 811256 ATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTG 811315 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| | ||| ||||||| || | ||| ||||| || || Sbjct 811316 ATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGA 811375 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 | ||||| ||| | || || || || ||||| || ||||| ||||| || |||||| Sbjct 811376 CGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 811433 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||||||| | ||||| |||||||||||| || | || | | || || Sbjct 809856 ACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAAAGTGTACGACCGTCTTCA 809915 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||| ||||| || || || |||||||| || || || |||||||| || ||||| Sbjct 809916 AGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 809975 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||||| ||| | ||| || || || || | || ||||| | ||| || |||||| Sbjct 809976 ATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTTTTA 810035 Query 193332 CCTGTTAGCGtttttacaaatatttgcat 193360 || || |||||||| ||||| |||||||| Sbjct 810036 CCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||||||||| | ||||| ||| ||||| || || | ||| | Sbjct 811446 CGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCG 811505 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| ||||| || |||||||| ||||| || || ||||||||||| Sbjct 811506 TCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 811565 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | |||| || || || || | ||||||||| | || || Sbjct 811566 TCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATG 811625 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || || ||||| || ||||| ||||| || |||||| Sbjct 811626 GTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 811661 Score = 105 bits (116), Expect = 1e-17 Identities = 199/289 (69%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||||| || |||| ||| | || | || || |||||| || || Sbjct 811659 ATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCA 811718 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | || ||||| ||||| || || | ||| |||||||| Sbjct 811719 GACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGT 811778 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | ||||| || || || || |||| |||| Sbjct 811779 GGGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCA 811838 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttattagta 193370 ||||| |||||||| || || || || | || || || || || ||||| | | || Sbjct 811839 ACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGGTGCT-CTA 811897 Query 193371 aaataattattttaaataatatatac-tttatattttaacattatatta 193418 ||||| |||| | | |||| || |||| |||||| ||||||| Sbjct 811898 CAATAA-AATTTCACGTTATATGGACGATTATCTTTTAATCATATATTA 811945 >seq1163 Length=8263949 Score = 159 bits (176), Expect = 6e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||| | || || ||||| || | ||||| ||||| ||| || Sbjct 3691906 AATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTT 3691965 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | ||||| ||| || | |||||| ||||| ||||| | | |||||| Sbjct 3691966 GTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTG 3692025 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||||||||| || ||||||| ||||| ||| ||||| || || Sbjct 3692026 ATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGA 3692085 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || || ||||| ||||| || |||||||| || || ||||| || || ||||||||| Sbjct 3692086 AGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692143 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || ||||| || | ||||| ||||| ||| || Sbjct 3692135 ATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTG 3692194 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| ||| || | |||||| ||||| ||||| | | ||||||| Sbjct 3692195 TAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGA 3692254 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||||||||| || ||||||| ||||| ||| ||||| || ||| Sbjct 3692255 TCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAA 3692314 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 | || ||||| ||||| || |||||||| || || ||||| || || ||||||||| Sbjct 3692315 GCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692371 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| | || || ||||| || | ||| | ||||| ||| || Sbjct 3692363 ATTTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTG 3692422 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| ||| || | |||||| ||||| ||||| | | ||||||| Sbjct 3692423 TAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGA 3692482 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||||||||| || ||||||| ||||| ||| ||||| || ||| Sbjct 3692483 TCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAA 3692542 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 | || ||||| ||||| ||||||||||| || || ||||| || || ||||||||| Sbjct 3692543 GCTTCGACTTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692599 Score = 134 bits (148), Expect = 2e-26 Identities = 196/273 (72%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | |||| || || ||| || ||||| || | ||||| | Sbjct 3693296 CGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCA 3693355 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||| ||||| ||||| || || | |||||||| ||||| || ||||||||| Sbjct 3693356 TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 3693415 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | |||| ||||| || |||| || || || || || || Sbjct 3693416 TCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATG 3693475 Query 193326 GTTTTACCTGTTAGCGtttttacaaatatttgcat--tttattagtaaaataattatttt 193383 ||||| || || || ||||||||||| |||||||| | || || |||||| | Sbjct 3693476 GTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATGATGAATCTGT-AAATAACAA---- 3693530 Query 193384 aaataatatatact-ttatattttaacattata 193415 ||| ||||||| | ||||||| ||| | |||| Sbjct 3693531 AAAACATATATAATATTATATTATAATAGTATA 3693563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899636969196000