Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1527 113 1e-19 seq1538 102 2e-16 seq1279 87.8 5e-12 seq1188 86.0 2e-11 >seq1527 Length=1521549 Score = 113 bits (124), Expect = 1e-19 Identities = 126/164 (77%), Gaps = 11/164 (7%) Strand=Plus/Plus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGC-AACGTT 303695 ||||||||||| ||||| |||||||||||||||||||||||| |||| | || | || Sbjct 422279 TGTAAATTCATTTCATCCCCGTCAAAATCAGCATTATACGGCGATGTG-CAGCTTAGATT 422337 Query 303696 CATCCGGAAAGTA--TCAC-CCTGCATCATAACACGGGCTTTATGACACATCATAGACAT 303752 ||| ||||| ||| ||| ||| | ||||||| ||||| ||||||| ||| Sbjct 422338 CATGCGGAATGTACTCCACGGAAGCACCTTAACACG------ATGACCCATCATACTCAT 422391 Query 303753 TCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796 |||||||||| |||||||||||||| | ||| | ||||||| Sbjct 422392 CTTGTGTAGAGTAGGCTGACGATTGAAGATTACGAGATCACCGT 422435 Score = 93.3 bits (102), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || |||||||||||||| |||||||| || || ||||| || ||| Sbjct 421184 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTCTCAGCCGTCTTTACGGCGGTA 421243 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||||||||| || || ||| | | ||| || ||| || || Sbjct 421244 TCGATAAGACCTTCACGACCACCCATTGCGTGAAAGTAGAACTC-GGAGGGCGTGAGACC 421302 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | || |||| || |||||||| | ||| || || ||| ||| | || Sbjct 421303 AGCGAGATACGAATTCTCGACAAAACCACGGGACTCTGGTCCATAGTCATCCTTAATGAA 421362 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 |||||||| || || || | || | || || || || || |||||||| || || Sbjct 421363 ATGTGGCAGCGTTCTCTTACGGAAACCAAAGGGTATCCGTTTACCTTCAACGTTTTGTTG 421422 Query 302814 TCC 302816 || Sbjct 421423 GCC 421425 >seq1538 Length=2636714 Score = 102 bits (112), Expect = 2e-16 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| || || ||||||| || || ||||||||| | Sbjct 947590 AAACAAATCTCTAACACGCCGGGCACCCTGACCAACGAGAATCTCATCAAATTCAGGGCC 947649 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | ||||| |||| ||||| || || ||||| | ||| | | ||| || Sbjct 947650 TGCCACATGGAAGAATGGTACACCGGCTTCTCCAGCGACTGCACGCGCTAACAATGTTTT 947709 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 |||||||| || || || |||| | |||||||| || | ||| | ||| || || Sbjct 947710 TCCTGTTCCTGGCGGACCGACTAACAATACTCCCTTCGGCAACTTTCCACCAAGGGCGGA 947769 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| |||||| |||||||||||||||| | | | |||||| | |||||||| Sbjct 947770 ---AAATTTATCAGGGTTCTTTAAAAATTCTACGACATTCAGAAGTTCTTGCTTTGCCTC 947826 Query 289326 ATC 289328 ||| Sbjct 947827 ATC 947829 Score = 100 bits (110), Expect = 8e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 |||||||| || ||||||| || | ||||| ||||| ||| | || || |||| Sbjct 1208385 GTGAAAATGTA--TCTCGGACTGGCAGAATCCTTTCCACCAGCAAGTCTTGTACCGAATT 1208328 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| | ||||| | ||||||||||| || || |||||||| || |||||| || Sbjct 1208327 GACCGATGGGCTGTAGCAGATTAATGTTATTGCTACCCACGAAATTCTGCGCGAGATTAA 1208268 Query 60261 CAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | || | | |||| | | || ||||||||||||| |||||||||| | |||| || Sbjct 1208267 CTATGGTCGCCATCAGAGACGTCT-CACCGTGATGATAAGCAGAATGTTCGGCAACAGAT 1208209 Query 60320 CCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| |||||||| | |||| Sbjct 1208208 CCCGCCAATTGCGCGACTTTCACTTCG 1208182 >seq1279 Length=1345835 Score = 87.8 bits (96), Expect = 5e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| || ||||| || |||||||| |||||||||||| | || || ||| Sbjct 438044 ATAGTCATACGAGAAGGGATAGCGTGAGGATTGATAATGATGTCGGGTGTAAGACCTTCA 438103 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 | || ||| ||||| | ||| | || || || ||||| || || ||||||||||| Sbjct 438104 GAAGAGAAAGGCATGT-CTTCTTGTCTGTACTGAATTCCACATGTACCTTTTTGTCCGTG 438162 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| || || || || || || ||| || ||||| || | || | ||| || Sbjct 438163 ACGCGACGCAAATTTGTCGCCGATTTGCGGAATACGTACACTGCGCACTCGGATCTTGCA 438222 Query 252024 GAAGTTGTAACCATC 252038 ||| || || || || Sbjct 438223 GAATTTATATCCTTC 438237 >seq1188 Length=1256755 Score = 86.0 bits (94), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTA-CCTGGATTTT 106982 ||| ||||| |||| |||||||| || |||| | || || ||||| || | || Sbjct 1144712 CATTCCATAAAAAAGTTTGAACTTCTTTCCATTCTTTTCTAT-AACTTCGCCCCCACATT 1144654 Query 106983 CATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTT 107042 ||||||| || ||||| | ||||| |||| || || || || || ||||||||||||| Sbjct 1144653 CATCGTGACCTGCAAATATTCCGCCTGCCATGACAAAGTCTGCGCCACCACCGAATGCTT 1144594 Query 107043 TAGCCATATCACCAGGGCAAGTAATTCCACCATC 107076 | || | ||| ||||| || ||| |||||| || Sbjct 1144593 TCGCTAAATCTCCAGGACAGGTACATCCACCGTC 1144560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471788370622350