Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1238 226 2e-54 seq1163 131 1e-25 seq1181 86.0 5e-12 >seq1238 Length=3292682 Score = 226 bits (250), Expect = 2e-54 Identities = 325/456 (71%), Gaps = 4/456 (1%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||| ||||||| ||| | ||||| | ||| || | | || ||| || | Sbjct 3280314 CGGCGGATTTTTCAAGATGTATGTGTTCAACTTGTGATTGCTCTCAAGAAGGCCATGGTG 3280373 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 || || || ||||| ||||| | || || ||| || || || || || | || Sbjct 3280374 CCCACACGCCTTGCAACCCTGTGAAATCGTGCCCTTCTT--CGAACTGACCATTAATTCG 3280431 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || || || |||| || | ||| | || || ||||||||||| |||||| Sbjct 3280432 GTTTCCGGATTATCGCAGGCCGGGCAAAGAACATATTTTCGAATGAAACCATCCAGCAGG 3280491 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 || |||||||| | ||||| ||||||||||||||||| |||||||| ||| | || Sbjct 3280492 TCTTGTAACTTTGTCGCATCGTGTGAGCCGTTGACGATGAAGCGTTCGTTCTTGAAGTCA 3280551 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||| || || ||||||| |||||| ||||| ||||| ||||| || | || ||||| Sbjct 3280552 AACTGTGTCTGAGCGCCCAACTCGCAACCGAAATACTTGGTCGGATATGTAGCAGGACGA 3280611 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || | |||||| || | || |||||||||||| || || || || || || || || Sbjct 3280612 CCGATCGCCTTCGCCACATCCACCATGTTGACGATCACTGTTTTAATACCATTTCCTTTG 3280671 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 ||||| ||||| || ||| |||||||| || || || || || || || |||||| Sbjct 3280672 CCTTCCACCTTTGCCTGGATCCGCGGCATCTTATAACGATAAAAAGCATCGCTGACATTG 3280731 Query 34621 CGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || || ||||| || ||||||| ||| | | |||| Sbjct 3280732 CGATTGACGTTTACGCTCCCCATGGTGACCGATGTT 3280767 >seq1163 Length=8263949 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | ||||| ||||||||||| ||||| || ||| | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || ||| ||| | |||||| || || || |||||||| | || ||||| Sbjct 3692083 A-GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692025 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || |||||||| ||||| |||| |||||| | | || |||| Sbjct 3692024 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3691965 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||||| | ||| |||| | | || ||||| |||| Sbjct 3691964 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3691914 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | ||||| ||||||||||| ||||| || ||| | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || ||| ||| | |||||| || || || |||||||| | || ||||| Sbjct 3692311 A-GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692253 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || |||||||| ||||| |||| |||||| | | || |||| Sbjct 3692252 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692193 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||||| | ||| |||| | | || ||||| |||| Sbjct 3692192 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3692142 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | ||||| ||||| ||||| ||||| || ||| | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || ||| ||| | |||||| || || || |||||||| | || ||||| Sbjct 3692539 A-GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692481 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || |||||||| ||||| |||| |||||| | | || |||| Sbjct 3692480 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692421 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | ||| |||| | | || ||||| |||| Sbjct 3692420 ACATTCAAAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3692370 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | || || |||||||||||| ||||| || ||| | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 3691855 A-GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3691797 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| ||||| |||| |||||| | | ||||||| Sbjct 3691796 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 3691737 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| ||||||||||| || | ||| | || ||| |||| || || || Sbjct 3691736 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 3691688 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | || || |||||||||||| ||||| || ||| | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | ||||| || ||| |||||||| || | || ||||| Sbjct 3692995 A-GACACCATCGAAAACGTAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692937 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| |||| |||| |||||| | | || |||| Sbjct 3692936 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 3692877 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||| |||||||| ||| | ||| |||| | | || ||||| |||| Sbjct 3692876 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3692826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 ||||||||| || || |||||| | ||||| |||||||| ||| | ||| || |||| Sbjct 3692827 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3692768 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || | | | ||||| || ||| |||||||| || | || ||||| Sbjct 3692767 T-GACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692709 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || |||| || || ||||| |||| |||| ||||| | | || |||| Sbjct 3692708 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGACTACA 3692649 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||| |||||||| ||| | ||| |||| | | || ||||| |||| Sbjct 3692648 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3692598 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||| | |||||||| ||||| ||||| | || || |||||||| ||| | || | Sbjct 3693519 AGATTCATCATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTG 3693460 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || || ||| ||| | || ||| ||||| || |||||||| | || Sbjct 3693459 GAAGCTTCTGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCT 3693400 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||||||| | | || | ||| || || || || ||||||| |||||| | | Sbjct 3693399 CCAGATCAACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCT 3693340 Query 110444 GATTACAACATTCAAAAAGAATCTACG 110470 || ||||||||||| || ||||||||| Sbjct 3693339 GACTACAACATTCAGAAGGAATCTACG 3693313 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 ||||| || ||||| || ||| | || || |||||||| ||| | ||| || |||| Sbjct 3693282 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3693223 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | ||||| || ||| |||||||| || | || |||||| Sbjct 3693222 -GACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3693164 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| || || ||||| |||| |||| ||||| | | |||||||| Sbjct 3693163 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAA 3693104 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| |||||||| ||| | ||| |||| | | || ||||| |||| Sbjct 3693103 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAA 3693054 >seq1181 Length=949089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || |||||||||||| | || || ||||| ||||| | || || ||| | | Sbjct 809836 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 809777 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||| ||| || ||||||||| | || ||||| Sbjct 809776 -GACACGATTGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 809718 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||| |||| ||||| || ||||| ||||||| | || | | || || || Sbjct 809717 ACAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAA 809658 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| ||||||||||| | ||| | || | |||| |||| ||| Sbjct 809657 TATTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGA 809609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412833801164150