Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1163 127 1e-24 seq1153 105 4e-18 seq1181 104 2e-17 seq246 82.4 5e-11 >seq1163 Length=8263949 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| || ||||||||||| || || | Sbjct 3693054 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGG 3693113 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||| ||| || |||||||| ||||| || || || || | | Sbjct 3693114 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3693173 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || ||| | |||| | ||| ||| || | Sbjct 3693174 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3693233 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| ||||| || ||||| || ||||||||||||||||||||| Sbjct 3693234 CTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 3693283 Score = 116 bits (128), Expect = 2e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || || | | |||| || ||||||||||| || ||| Sbjct 3693320 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAG 3693379 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||| || ||| | || | || || || || | || || |||||| | Sbjct 3693380 ATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTT 3693439 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || || || |||| ||| ||||| ||||| |||||||| |||||| Sbjct 3693440 TCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACA 3693499 Query 34967 AAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 3693500 AAGATTTGCATGAT 3693513 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| || ||||||||||| ||||| | Sbjct 3692598 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692657 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||| ||| || |||||||| ||||| || || || || | | Sbjct 3692658 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692717 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || ||| | |||| | ||| ||| || | Sbjct 3692718 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3692777 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || ||||| || || || ||||| ||||| Sbjct 3692778 CTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||||||||| ||| || ||||||||||| ||||| | Sbjct 3692826 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692885 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| |||| ||| || |||||||| ||||| || || || || | | Sbjct 3692886 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692945 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || ||| | | || | || || |||| Sbjct 3692946 GAATTCCCTCTTTGTCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 3693005 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 3693006 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 >seq1153 Length=2037154 Score = 105 bits (116), Expect = 4e-18 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || ||||| || || || | |||| |||| ||||| || || ||||||||||| Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| || || ||| |||| | ||||||||||| | || || ||||| || || Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCT 1924078 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | ||| |||||| || || | ||| ||||| || ||||| ||||| || || | Sbjct 1924079 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 1924138 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 1924139 AGATCTGCATG 1924149 >seq1181 Length=949089 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| || |||||||||||||| || || || | || | || Sbjct 811449 AGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 811508 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| || ||||||| || ||||| ||| | || | || || ||||| Sbjct 811509 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT 811568 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||||| | | |||| || ||||| || || | || |||||| Sbjct 811569 TGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTC 811628 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| || |||||||||||||| Sbjct 811629 TTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| |||||||| || || |||| |||| || ||||| |||||||||||| Sbjct 811242 TCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAG 811301 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || || |||| | ||||| ||||| || Sbjct 811302 ATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTATTGAATTTTGGCCTTGAC--AT 811359 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||||| | || | || ||||||||||| || ||||| || | Sbjct 811360 TCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGA 811419 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 811420 CAAAAATCTGCAT 811432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| || ||||| || || | || | || || ||||| || ||||||||| Sbjct 810786 TCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAG 810845 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | |||||||| | || | || |||||||| | ||||| |||||| || Sbjct 810846 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGAC--AT 810903 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||||| || || | || ||||||||||| || | ||||| | Sbjct 810904 TCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGA 810963 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 810964 CAAAAATCTGCAT 810976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| |||||||| || || |||| |||| || ||||| |||||||||||| Sbjct 811014 TCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAG 811073 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | | |||||||| | || | || ||||| || | ||||| |||||| || Sbjct 811074 ATTAACCTCTGCTGGTCCGGAGGAATTCCTTCCTTATCTTGAATTTTGGCTTTGAC--AT 811131 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || || ||||| || | || || || || || || || || || | Sbjct 811132 TCTCAATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAA 811191 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 811192 CAAAAATTTGCAT 811204 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || ||||| || || | || | || || ||||| || ||||||||| Sbjct 810102 TCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAG 810161 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||||||| | || | || |||||||| | ||||| |||||| || Sbjct 810162 ATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGAC--AT 810219 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || || ||||| || | || || || || || || || || || | Sbjct 810220 TCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGA 810279 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 810280 CAAAAATTTGCAT 810292 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || ||||| || || | || | || || ||||| || ||||||||| Sbjct 810330 TCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAG 810389 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||||||| | || | || |||||||| | ||||| |||||| || Sbjct 810390 ATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGAC--AT 810447 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || || ||||| || | || || || || || || || || || | Sbjct 810448 TCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGA 810507 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 810508 CAAAAATTTGCAT 810520 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | ||| || ||||||| || | ||| ||||| ||||| || || || | Sbjct 811660 TTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAG 811719 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| ||||| |||||||| || || |||| || ||||| || | | Sbjct 811720 ACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTG 811779 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || ||| ||| ||| | || | ||| ||||| | Sbjct 811780 GGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAA 811839 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||||||||||| || || | ||||| || || ||||||||| Sbjct 811840 CTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 811889 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || ||||| || || | || | || || ||||| || ||||||||| Sbjct 810558 TCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAG 810617 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | |||||||| | || | || |||||||| | ||||| |||||| || Sbjct 810618 ATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGAC--AT 810675 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || || ||||| || | || || || || || || || || || | Sbjct 810676 TCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGA 810735 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 810736 CAAAAATTTGCAT 810748 >seq246 Length=259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 ||||| || || | || | || || ||||| || ||||||||||||| | |||||| Sbjct 258 TAGTCAGAAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGG 199 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCAT 34919 ||| | || | || |||||||| | ||||| |||||| || || || | || Sbjct 198 TCTGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGAC--ATTCTCGATAGTATCTG 141 Query 34920 TGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 140 ACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686647459450