Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1181 114 2e-20 seq1163 114 2e-20 seq1394 86.0 1e-11 >seq1181 Length=949089 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| ||||| | || || ||| | | Sbjct 809835 TGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCAG 809776 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || || ||||| ||| ||||||||||||||| |||||||||| Sbjct 809775 ACACGATTGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAAC 809716 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || || |||| ||| | || ||| | || ||||||| Sbjct 809715 AAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAATA 809656 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || | || | ||| | ||| | ||||| || Sbjct 809655 TTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 809610 >seq1163 Length=8263949 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || ||| | | Sbjct 3692141 TGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCAG 3692082 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| |||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 3692081 ACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAAC 3692022 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||||||| | || ||| ||||| | | || || || | Sbjct 3692021 AGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAACA 3691962 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 3691961 TTCAAAAAGAATCTAC 3691946 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || ||| | | Sbjct 3692369 TGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCAG 3692310 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| |||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 3692309 ACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAAC 3692250 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||||||| | || ||| ||||| | | || || || | Sbjct 3692249 AGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAACA 3692190 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 3692189 TTCAAAAAGAATCTAC 3692174 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || ||| | | Sbjct 3692597 TGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTCAG 3692538 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| |||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 3692537 ACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAAC 3692478 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||||||| | || ||| ||||| | | || || || | Sbjct 3692477 AGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAACA 3692418 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 3692417 TTCAAAAAGAATCCAC 3692402 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| ||||| | || || ||| | | Sbjct 3691913 TGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCAG 3691854 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| ||||| ||||| || ||||| || |||||||| ||||||| Sbjct 3691853 ACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAAC 3691794 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || || |||||| | || ||| ||||| | | ||||| || | Sbjct 3691793 AGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACA 3691734 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || |||| ||||| |||||| | | |||||| Sbjct 3691733 TCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGGT 3691687 >seq1394 Length=3067246 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| |||||| | || ||||| ||||| ||||| || || || Sbjct 201065 AGGAATTCCACCAGATCAGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGCAG 201006 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| || | ||||||||||| || || ||||| ||| | || ||||| | || || | Sbjct 201005 AACTTTGTCGGATTATAATATCCAGAAGGAATCTACTTTACACTTAGTGCTGCGCTTGCG 200946 Query 146252 AGGAGGT 146258 ||| ||| Sbjct 200945 AGGCGGT 200939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786151168026000