Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1540 280 1e-69 seq1533 203 2e-46 seq1169 113 3e-19 >seq1540 Length=5613228 Score = 280 bits (310), Expect = 1e-69 Identities = 701/1048 (67%), Gaps = 20/1048 (2%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 |||||||||| || | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 2650963 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 2651022 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || ||||||||||||| || | || || | Sbjct 2651023 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 2651082 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 |||| | | ||||| ||| | | ||||||||| || || || || || ||||| Sbjct 2651083 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAA-CGTCTGG 2651141 Query 281622 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | ||| || ||||| ||||| || | ||| | | ||||||||| || ||||| Sbjct 2651142 GTCTGTTTTGTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 2651201 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 2651202 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGA---CTTCC 2651258 Query 281741 TCAG-TTTG--ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 |||| |||| || ||||| || || |||| || |||||||| |||||||| || Sbjct 2651259 TCAGATTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCG 2651318 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 || ||||||| | || || |||| || || || || |||| ||||| || || | Sbjct 2651319 TCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTTCT-G 2651377 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | || || || | || || || || |||| || || || || || | |||||| Sbjct 2651378 AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATC 2651437 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | ||| | | | ||||| |||||||| ||| |||||||| || | Sbjct 2651438 CATCTTGGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAGATCAGC 2651497 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || |||||| | |||||||| || || | || || ||||| || || ||| Sbjct 2651498 GCAGAGCTCCTCGAATCTGGCTCTAGT--GACCGATGTATAGAAGTCAATCCCCTCAAAC 2651555 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 || ||||||| ||||| | | || ||||| || | | | || || | || Sbjct 2651556 AATGAATCAATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCTCTCG 2651615 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTT 282153 || || ||||||| | || | ||| | | | | || ||| |||| | || ||||| Sbjct 2651616 CAAGCAGTCCTTAAACGTCTCAGAGCTCTCTTGTTACTG-CTCAGATCTTTCTTGTATTT 2651674 Query 282154 TCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || ||||| |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 2651675 CCTTTTGAATTCTT--GCACAAAATGGTTCACCATTCGGTTATCAAAGTCCTCACCACCA 2651732 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | ||| | | | |||| ||| | ||||| || | | || || Sbjct 2651733 AGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAATC 2651792 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | || ||| ||| |||||||||| ||||| || || |||||| |||| | Sbjct 2651793 GACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAGCC 2651852 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||||||||||||||| || | ||||| || || || || || || ||||| | ||| Sbjct 2651853 TTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAACG 2651912 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||| || ||||| || || |||||||| || || || || ||||| Sbjct 2651913 TTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAATAA 2651972 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTA 282479 || || ||||| || ||||||| ||||| Sbjct 2651973 GCTGGCACAGTGATGACGGCATTTGTTA 2652000 >seq1533 Length=2891333 Score = 203 bits (224), Expect = 2e-46 Identities = 713/1099 (65%), Gaps = 16/1099 (1%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || |||||||| || || || ||| || || || || |||| | ||||| ||| Sbjct 1440656 TTGGTAATAGTGATCTTGTTCTCCTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAGA 1440715 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || ||||| | ||| || || || ||||| ||||| || || | | || ||| Sbjct 1440716 ATACCGTTCGCATCGATATCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGGT 1440775 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| | ||||| ||||||||| || || | || ||| Sbjct 1440776 GGAATACCGCTAAGCTCGAATTTGCCCAGTAAATTATTATCCTTGGTCATGGCGCGCTCA 1440835 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | || || || | | |||||| || | ||||||||||| | Sbjct 1440836 CCCTCGTATACCTGAATCAACACGCCGGGTTGATTGTCGGCGTAAGTTGTAAAGGTTTGA 1440895 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || || || || || || || | ||||| |||||| | |||||| || Sbjct 1440896 GTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATAAGCGCGGTCATGACACCACCGGCA 1440955 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| ||||| || ||||||||||| | | | | | ||| | | || Sbjct 1440956 GTCTCAATACCTAGAGAGAGCGGAGTGACATCGAGCAAAAGCAAGTCTTGCACCTCCTC- 1441014 Query 281741 TCAGTT-TGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | | || | ||| ||||| |||| || || | || || || ||||| ||||| |||| Sbjct 1441015 TGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGCCACAGCCTCAT 1441073 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTT 281857 ||||||| | || || || || | ||| ||||||||||| | ||| | || || | Sbjct 1441074 CAGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCTTGCAGGAGCTTCT-GA 1441132 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 | || ||||| || | || ||||| ||||| || || || || | || | ||| ||| Sbjct 1441133 ATTTTGGGAATTCGCGTAGAGCCTCCGACTAAAACGATATCGTGGATTTGAGCTTTGTCC 1441192 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | || | |||||||||||||||||| | | | || | || | Sbjct 1441193 ATCTTGGCGTCGCGCAGCGACTTTTCAACGGGTTCAAGAGTACCACGGAAGAGATCGGCG 1441252 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 282037 || ||||| ||||| ||||| || | | | | |||||||||| || |||| Sbjct 1441253 CAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCAATTCCCTCATACAAC 1441312 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 ||||| | || || | | || || || || || || | || || |||||||| || Sbjct 1441313 GAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTGCGCTTGGCACGTTCGCAG 1441372 Query 282098 GCTGTCCTTAGTCTTCGTAAG---GCTTTTGCT-GATTGATTCAAATCTGTTTTATATTT 282153 ||||| | || | || ||| || ||| | || | ||||||| | || ||||| Sbjct 1441373 GCTGTGCGAAGACGACG-AAGTGCGCGTTTATTCGA---AGTCAAATCCTTCTTGTATTT 1441428 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 | |||||| || | || | | || | || |||||||| || ||||| ||||| Sbjct 1441429 ACGCTTGAATTCCTGTACGAAGTGATTGACCATGCGGTTATCAAAGTCCTCACCACCCAA 1441488 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | ||||| ||| | ||| | | || | ||| | |||||||||| || || | | Sbjct 1441489 ATGAGTATCTCCCGCCGTGGACTTGACCTCGAAGATACCATCTTCAATAGTCAGGATGGA 1441548 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 || || || |||||||| | |||||| ||||| || || || | | | || Sbjct 1441549 CACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTTCGCTCGCCG-GTGGCTT 1441607 Query 282334 T-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || || |||||||| |||| || || || || || || || ||||| | ||| |||| Sbjct 1441608 TCTTGTCGAGACCATATGCAATTGCGGCGGCGGTGGGCTCGTTGATAATACGCAATACAT 1441667 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | || | || | || || || || || || || | || || ||||| || || | Sbjct 1441668 TTAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAAG 1441727 Query 282453 CAGGAACAGTAATAACGGC 282471 | || || || || || || Sbjct 1441728 CGGGGACGGTGATCACAGC 1441746 >seq1169 Length=4285202 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| || |||||||||||||| | Sbjct 2103222 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTAC 2103163 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | |||||| | |||||||| || |||||||| || ||||||| ||| ||||| Sbjct 2103162 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATC 2103103 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||||| || || ||||| ||||| |||| ||||| Sbjct 2103102 ATTAAAATACGCTGGTACAGTGATAACAGCATTCTTTACT 2103063 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || ||||| || ||||| |||||||||||||||| |||||||| || || ||| Sbjct 2103200 CCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTCAATCCAGCA 2103141 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| || | ||||||||||| ||||||||||| Sbjct 2103140 ATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTG 2103081 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 2103080 ATAACAGCATTCTT 2103067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740554301550300