Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1163 113 4e-20 seq1181 93.3 4e-14 seq1153 84.2 2e-11 >seq1163 Length=8263949 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||||||||||||||||||| | || | | Sbjct 3691928 CGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCA 3691987 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||||| | || |||||||||||||| || || || ||||||||| Sbjct 3691988 TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTA 3692047 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | | || ||||||| || | Sbjct 3692048 TCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATG 3692107 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | ||| || ||||| Sbjct 3692108 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||||||||||||||||||| | || | | Sbjct 3692156 CGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCA 3692215 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||||| | || |||||||||||||| || || || ||||||||| Sbjct 3692216 TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTA 3692275 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | | || ||||||| || | Sbjct 3692276 TCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATG 3692335 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | ||| || ||||| Sbjct 3692336 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||||||||||||||||||| | || | | Sbjct 3692384 CGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCA 3692443 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||||| | || |||||||||||||| || || || ||||||||| Sbjct 3692444 TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTA 3692503 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | | || ||||||| || | Sbjct 3692504 TCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATA 3692563 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | ||| || ||||| Sbjct 3692564 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||| ||||||||||||||| | || | | Sbjct 3692840 CGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCA 3692899 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | || |||||||||||||| || || || || ||||| Sbjct 3692900 TCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 3692959 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||||| || | Sbjct 3692960 TCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATG 3693019 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||||||| | |||||| ||||| Sbjct 3693020 GTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| || || | | || |||||||| |||||||| || | || | | Sbjct 3691700 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 3691759 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| |||| | || |||||||||||||| || || || || ||||| Sbjct 3691760 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 3691819 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||||| || | Sbjct 3691820 TCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATG 3691879 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||||||| | |||||| ||||| Sbjct 3691880 GTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||| ||||||||||||||| | || | | Sbjct 3692612 CGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTACCA 3692671 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | || |||||||||||||| || || || || ||||| Sbjct 3692672 TCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 3692731 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||| | || | Sbjct 3692732 TCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATG 3692791 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | ||| || ||||| Sbjct 3692792 GTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 >seq1181 Length=949089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| || |||||| | || || ||| || ||||| || || | Sbjct 809643 GATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCG 809702 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | ||||| | |||||||| ||||| |||||||||||||| |||||| |||| Sbjct 809703 AAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCCTTCACG 809762 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | || || || | ||| | ||||||||||| |||||||| Sbjct 809763 TTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTG 809822 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 809823 ACAAAAATCTGCAT 809836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | | |||||||| | | || || |||||||| ||||| || || || Sbjct 811667 ACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGT 811726 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | | | || | |||||| ||||| || || ||||| Sbjct 811727 ACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGGATGCC 811786 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| || ||| ||| | | || | || || | | ||| ||||| | Sbjct 811787 TTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAG 811846 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || |||| || || | ||||||||||||| Sbjct 811847 AGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 811889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | || || |||||||| |||||||| | ||||| || Sbjct 810764 CAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810823 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || ||||| |||| |||| | | ||| || || || || || ||||| || || Sbjct 810824 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810883 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | || | |||||| | || ||| ||||| | ||| | || Sbjct 810884 CTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATGGT 810943 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||| || || | ||||||||||| Sbjct 810944 CTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 >seq1153 Length=2037154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| |||||||| ||| || || || ||| || |||||||| |||| ||| Sbjct 1923959 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1924018 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || |||||||||||||| || || || || || || || || || | | | Sbjct 1924019 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1924078 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||||| | | ||| || |||| || | |||||||| || || ||||| | || Sbjct 1924079 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 1924138 Query 132114 AAATCTGCATG 132124 | ||||||||| Sbjct 1924139 AGATCTGCATG 1924149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601965658000