Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1181 111 1e-19 seq1153 91.5 1e-13 seq1163 82.4 7e-11 >seq1181 Length=949089 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| || || | |||||||| | || ||||||||||| |||||||| | Sbjct 811660 TTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAG 811719 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || ||||||||||| || ||||||||||| |||||||| || | | Sbjct 811720 ACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTG 811779 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | || || || ||| |||| ||||||| ||| | | ||||| | || Sbjct 811780 GGATGCCTTCTTTATCCTGGATC-TTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCA 811838 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || || ||||| || ||||| || |||||||| Sbjct 811839 ACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 811888 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| |||||||| || || ||||| ||||| ||||| || | Sbjct 810522 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810581 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || || || ||||||| ||||||||||| || Sbjct 810582 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810641 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| || || | | | | | ||| || || ||| || Sbjct 810642 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGAC 810700 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 810701 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||| |||||||| || || ||||||||||| ||||| || | Sbjct 810750 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAA 810809 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || || || ||||||| ||||||||||| || Sbjct 810810 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810869 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| || || | | | | | || || || || || Sbjct 810870 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAAC 810928 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || ||||| || || ||||| |||||||| Sbjct 810929 TTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || ||| ||||| ||||| || || || | Sbjct 810978 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811037 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || || || || || || || |||| ||||||||||| |||| Sbjct 811038 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGA 811097 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| | | ||| ||| || || | | | | | |||||| || ||| || Sbjct 811098 ATTCCTTCCTTAT-CTTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCGAC 811156 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 811157 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 >seq1153 Length=2037154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| ||||||||||||| ||| || || | || |||||||| || || || || || Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | ||||| || || | |||| | |||||||||| |||||| ||| | | | | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | || || ||||||||||| | |||||||| || Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 1924141 ATCTGCAT 1924148 >seq1163 Length=8263949 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||||| | |||| | || |||| || || || || || Sbjct 3693092 TCTTTCTGAATGTTGTAATCGGAAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAA 3693151 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 |||| ||||| || |||| |||| | ||| |||||| ||| ||| | ||| | | Sbjct 3693152 ATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCC-TGAATTTTGGCCTTTACGTT 3693210 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || || | ||||| ||||||||||| | ||| || || Sbjct 3693211 TTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTAC 3693270 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 3693271 AAAGATCTGCAT 3693282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450784865874000