Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1238 105 9e-18 seq1492 104 3e-17 seq1170 96.9 5e-15 >seq1238 Length=3292682 Score = 105 bits (116), Expect = 9e-18 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || || | || | |||||| || ||||| || ||||| || || || || Sbjct 3273242 AATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTG 3273301 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 ||| || || ||||| | |||||| | ||||| || ||| | ||||| || | Sbjct 3273302 AAAGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAG 3273361 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| ||||| || || ||||| ||||||||||||||| || ||||| |||||| Sbjct 3273362 ATTCTCATTAACGATACCATCGGAAGCGGCAAAAAATGCTAAAACATGAGAGATAAAACG 3273421 Query 40063 TTTTTCATCGGGTGTCAATTT---ATTCCAGTCATTGATATCTT 40103 ||| ||||||| | | ||| ||||||||| || | |||| Sbjct 3273422 TTTCTCATCGGAATTTAGTTTTTCATTCCAGTCCTTCTTGTCTT 3273465 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| |||||||||| | | ||||| |||||||||||||| ||||| | ||| Sbjct 3271682 TTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAATTCGATGTAATTACACATG 3271741 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | | |||||||||||| |||| ||| || | || | ||| | ||| || ||||| Sbjct 3271742 AATGTGCGATTCATTCCTATTAGTTCAACCGGCAATGCTTGCGTCAAAAATTCCTTTTCA 3271801 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAAT 39598 || |||||||| || ||| || ||| | || || ||| || ||| || | Sbjct 3271802 ATTTCTACGGCGTCCATTACAATTGATTTCAC-AC--GCTCAAACGATGGCTTTTGTACG 3271858 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | ||||||||||| || |||||||| || ||||||| |||| Sbjct 3271859 ATGTGTTTAAACATCAAACAGGCGAAATCGCAATGTAATCCCT 3271901 >seq1492 Length=1263116 Score = 104 bits (114), Expect = 3e-17 Identities = 185/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || ||||| || |||| |||| | |||||||||| || || || || || || || Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || |||||| | ||| |||||||| || || || || || | |||||| Sbjct 356939 TATCGTTCAGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 356998 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || | || || | |||||||||||| ||||| | || || | ||| ||| |||||| Sbjct 356999 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 357058 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTT 70207 | |||||| | | || || |||||||| |||| ||| || || ||||| || | | Sbjct 357059 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGAT 357116 Query 70208 CGTAAATAATAACAGAATTTAGTTTATC 70235 |||| || ||| |||||| ||||| || Sbjct 357117 CGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 100 bits (110), Expect = 4e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| ||| || | ||| ||||| || || |||||| ||||| || || | | Sbjct 355176 GTTAAATCTCGCAGTAAATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTC 355235 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || ||||| || ||||| ||||| | ||||| || ||||| | ||| || || || Sbjct 355236 ACATATATATTGCTTGTATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTC 355295 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || |||||||||||||| | || | | |||||| | || ||| | ||| || Sbjct 355296 GAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTC 355355 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 |||| | | | ||||||||| | || | ||| ||| ||||| | ||| ||||| Sbjct 355356 GCTTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGG 355415 Query 68926 AGAAT 68930 ||||| Sbjct 355416 AGAAT 355420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||||||||||||||||||| || |||||| |||||| ||||||||| | |||| Sbjct 356250 AATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGACACATTAGGCTCCAC 356309 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 | || |||| | || |||| |||||| ||||| || ||||| ||| Sbjct 356310 ATCTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGA 356357 >seq1170 Length=7610050 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| ||||||||| || Sbjct 7501370 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATTAAACT 7501311 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||| ||||||||||| ||| |||||||| |||| || ||| |||| Sbjct 7501310 CCATACATCATCATCAAAAACACGTTTCATGAATAAATTTGGAGTCCA 7501263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895491142000