Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1238 111 1e-19 seq1288 105 5e-18 >seq1238 Length=3292682 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||| |||||| ||| ||||| || |||||||| || ||| || || || ||| Sbjct 3273427 GAGAAACGTTTTATCTCTCATGTTTTAGCATTTTTTGCCGCTTCCGATGGTATCGTTAAT 3273368 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | || | || |||||||| || | | |||||||| ||||| ||| Sbjct 3273367 GAGAATCTAATTGAGAGATTCAGCCAAGAAGTGAAAATTTCCGAAGCACGTTGTTTCTAT 3273308 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || ||||||||||||||||||||||||||||| || ||||| Sbjct 3273307 GGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTA 3273267 >seq1288 Length=1952040 Score = 105 bits (116), Expect = 5e-18 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||| |||||| | || || || ||||| |||| || |||||| Sbjct 616674 ATTGGTGGCTTGGATAAGGAGTTTAGCGCCATTTTCCGAAGAGCCTTTGCATCCCGTGTT 616733 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || | | || | ||| |||||||| || || ||||| ||| | ||| | ||| Sbjct 616734 TTCCCAACGGAGATTGTTACTCAATTGGGTTGCAAGCATGTAAAAGGAATCTTGTTATAT 616793 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACA 19419 || ||||| ||| ||||| || ||||| || | || | ||| | ||| | || Sbjct 616794 GGTCCACCTGGTACAGGAAAGACGTTAATGGCTCGGCAAATAGGTACAATGTTAAATGCA 616853 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | |||| |||||||||||||| || |||| || |||||||||| || || Sbjct 616854 AGAGAACCG---AAAATTGTAAATGGCCCACAAATTTTGGATAAATATGTTGGAGAAAGC 616910 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 || | ||| | || | ||||| ||||| || ||||||||| ||||| Sbjct 616911 GAGGCTAATATCAGAAGATTGTTCGCTGAAGCAGAAGAAGAAGAAAAA 616958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448491807750