Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1181 100 2e-16 seq1163 89.7 4e-13 >seq1181 Length=949089 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || |||||| || | Sbjct 811204 ATGCAAATTTTTGTTAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAA-GCGTC 811146 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| || || ||||| |||| ||| Sbjct 811145 GGACACGATTGAGAAT--GTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCGGAC 811088 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| ||||||| || |||||||||||| | || || | |||| | || || || Sbjct 811087 CAGCAGAGGTTAATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTAT 811028 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || || |||||||||||| | ||||| ||||| || Sbjct 811027 AATATTCAGAAGGAATCTACCTTGCATTTGGTTCTCCGTTTACGTGGTGG 810978 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || |||||| || | Sbjct 810292 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAA-GCGTC 810234 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||| ||||| | || ||| Sbjct 810233 GGACACGATCGAGAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGAC 810176 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| || || ||||| |||||| | || |||| || | | || || ||| Sbjct 810175 CAGCAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTAC 810116 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || || || || || ||| ||||||||||||||| Sbjct 810115 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTG 810080 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || |||||| || | Sbjct 810520 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAA-GCGTC 810462 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||| ||||| | || ||| Sbjct 810461 GGATACGATCGAGAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGAC 810404 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| || || ||||| |||||| | || |||| || | | || || ||| Sbjct 810403 CAGCAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTAC 810344 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || || || || || ||| ||||||||||||||| Sbjct 810343 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTG 810308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || |||||| || | Sbjct 810748 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAA-GCGTC 810690 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||| ||||| | || ||| Sbjct 810689 GGATACGATCGAGAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGAC 810632 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || ||||| |||||| | || |||| || | | || || ||| Sbjct 810631 CAGCAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTAC 810572 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || || || || || ||| ||||||||||||||| Sbjct 810571 AATATTCAGAAGGAATCCACATTGCATTTGGTTTTG 810536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| || || | || |||||| || | Sbjct 810064 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAA-GCGTC 810006 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||| ||||| | || ||| Sbjct 810005 GGACACGATCGAGAAT--GTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGAC 809948 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||| || || ||||| |||||| | || |||| || | | || || || Sbjct 809947 CAACAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTAT 809888 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| ||| ||||||||||||||| | | || ||||| Sbjct 809887 AATATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGCGG 809838 >seq1163 Length=8263949 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||||||||| || || ||| |||||| | || |||||| | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| ||||| || |||||||| |||| ||| || Sbjct 3692539 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692480 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTA 27965 || || | ||||| ||||| |||||| |||| || | |||| || | ||||| || Sbjct 3692479 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATG---GCAGAACTCTTTCCGACTA 3692423 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| |||||||| ||| | || ||||| ||||| | || || || Sbjct 3692422 CAACATTCAAAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855677536850