Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1163 154 1e-32 seq1181 127 1e-24 seq1153 125 5e-24 seq246 86.0 4e-12 >seq1163 Length=8263949 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| || ||||| || || |||||||| || | | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| |||||| |||||||| || | || || ||||| Sbjct 3691855 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3691796 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||||||||| | | ||| | |||||||| Sbjct 3691795 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3691736 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| |||||| | || ||||||||| | | || ||||| Sbjct 3691735 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 3691688 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| || ||||||||||| || | | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| ||||| || |||||||| | || || ||||| Sbjct 3692539 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692480 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || ||||| |||||||||||||| | | ||| | ||| ||||| Sbjct 3692479 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692420 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| |||||| | || | ||| | | | ||||||||| Sbjct 3692419 CATTCAAAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692371 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| || ||||||||||| || | | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| ||||| || |||||||| | || || ||||| Sbjct 3692083 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692024 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || ||||| |||||||||||||| | | ||| | ||| ||||| Sbjct 3692023 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3691964 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| || ||| | || | ||| | | | ||||||||| Sbjct 3691963 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3691915 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| || ||||||||||| || | | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| ||||| || |||||||| | || || ||||| Sbjct 3692311 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692252 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || ||||| |||||||||||||| | | ||| | ||| ||||| Sbjct 3692251 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692192 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| || ||| | || | ||| | | | ||||||||| Sbjct 3692191 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692143 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 3692827 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3692768 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| |||||| |||||||| || | || || ||||| Sbjct 3692767 TGACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3692708 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||| ||||||| | | ||| | ||| ||||| Sbjct 3692707 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGACTACAA 3692648 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | || | ||| | | | ||||||||| Sbjct 3692647 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692599 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| ||||| ||||| || |||||||| || | Sbjct 3693282 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3693223 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| |||||| |||||||| || | || || |||||| Sbjct 3693222 GACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 3693163 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||||||| ||||||| | | ||| | |||||||||| Sbjct 3693162 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAAC 3693103 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| ||||| | || | ||| | | | ||||||||| Sbjct 3693102 ATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3693055 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| || ||||| || || |||||||| || | | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| |||||| |||||||| || | || || ||||| Sbjct 3692995 AGACACCATCGAAAACGTAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3692936 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||| ||||||| | | ||| | ||| ||||| Sbjct 3692935 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692876 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | || | ||| | | | ||||||||| Sbjct 3692875 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692827 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| |||||||| ||||| || || || || | | Sbjct 3693510 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 3693451 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| || || || ||||||||| | || ||||||||| Sbjct 3693450 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 3693391 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || || ||||| || || | | ||| | || |||||| Sbjct 3693390 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 3693331 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | ||| | ||| Sbjct 3693330 ATTCAGAAGGAATCTACGCTTCATCTTGTT 3693301 >seq1181 Length=949089 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || || ||||| |||||||| | | Sbjct 811888 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 811829 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||| || || |||||||| | || || ||||| Sbjct 811828 GACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAG 811769 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| |||||||| || || || |||||||| | ||| ||||| |||||||| Sbjct 811768 CAGCGTTTGATATTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 811709 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || ||||| | ||||| || | || ||||| || ||| Sbjct 811708 ATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGGA 811661 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || ||||| || || || | |||||||| | | Sbjct 811661 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 811602 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || |||||| ||||||||||| | || |||||||| Sbjct 811601 AGACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 811542 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||| ||||||| || || | ||||| || Sbjct 811541 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAA 811482 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| |||||||| ||| |||| Sbjct 811481 CATTCAGAAAGAATCCACATTGCATCTAGT 811452 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || ||||| | |||||||| | | Sbjct 810976 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 810917 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | |||||| ||||| ||||| | || || || || Sbjct 810916 GATACTATCGAGAATGTCAAAGC-CAAAATTCAGGACAAGGAAGGAATCCCACCGGACCA 810858 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | || || || ||||| |||||||| ||||||| || |||||| || ||| Sbjct 810857 GCAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTT--CTGACTAC 810800 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || |||||||| ||||| ||||| ||| | || || || Sbjct 810799 AATATTCAAAAGGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGTGG 810750 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| || ||||| || ||||| | ||| |||| | | Sbjct 811433 AATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTC 811374 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | |||||| |||||||||| | || || |||| Sbjct 811373 AGACACTATCGAGAATGTCAAGGC-CAAAATTCAATACAAAGAAGGAATCCCCCCGGATC 811315 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || ||||| |||||||| ||||| | ||||| | || || | Sbjct 811314 AGCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATA 811255 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || || || || || || ||||| || || ||| | || || || Sbjct 811254 ATATTCAGAAGGAATCTACCTTGCATTTGGTATTGAGGCTTCGCGGTGG 811206 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || ||||| || || || || || || | | Sbjct 809836 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 809777 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| || |||||||| | || || |||||| Sbjct 809776 GACACGATTGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 809717 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | |||| || || ||||| || || || || | ||| |||||| ||| || || Sbjct 809716 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 809657 Query 23791 ATACAAAAAGAGTCCACA 23808 || || ||||| || ||| Sbjct 809656 ATTCAGAAAGAATCTACA 809639 >seq1153 Length=2037154 Score = 125 bits (138), Expect = 5e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || ||||| || || || | Sbjct 1924148 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1924089 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| || || | ||||||||||| Sbjct 1924088 GATACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGAATTCCGCCAGATCA 1924030 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| ||||| || | ||||||||| ||||||||| Sbjct 1924029 ACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAA 1923970 Query 23790 CATACAAAAAG 23800 ||| ||||||| Sbjct 1923969 CATCCAAAAAG 1923959 >seq246 Length=259 Score = 86.0 bits (94), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || ||||| || ||||| | |||||||| | | Sbjct 83 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 142 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | |||||| ||||| ||||| | || ||||| || Sbjct 143 GATACTATCGAGAATGTCAAAGC-CAAAATTCAGGACAAGGAAGGAATCCCACCAGACCA 201 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTT 23777 ||| | || || || ||||| |||||||| ||||||| || |||||| Sbjct 202 GCAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003214787400