Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1492 141 1e-28 seq1238 100 4e-16 seq1170 100 4e-16 >seq1492 Length=1263116 Score = 141 bits (156), Expect = 1e-28 Identities = 196/270 (73%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || ||||| || |||| | ||| | |||||||||| || || || ||||| ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || |||||| || || ||| |||||||| || || || ||||| || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || ||||| | |||||||||||| ||||| || || || ||||| ||| ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTC 78614 || || ||| | | || | ||||||||||||| ||| || || ||||| || | Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 78615 TCGTAAATAATAACAGAATTTAGTTTATCT 78644 ||||| || ||| |||||| ||||| ||| Sbjct 357116 TCGTATATTATAGCAGAATCCAGTTTCTCT 357145 Score = 125 bits (138), Expect = 1e-23 Identities = 198/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCT-CTG-TTAAAACTCTAAGGAGATGAGGAT 77118 ||||| ||||| || | ||| | ||||| ||| ||||| ||| || | ||| |||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGA--CCTCTACTGGTTAAATCTCGCAGTAAATGTGGAT 355200 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || |||||||||||||||||| | | || ||||| || ||||| |||| Sbjct 355201 TGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTT 355260 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||| |||||||| ||||| || || || || || |||||||||||||| | | Sbjct 355261 CAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTA 355320 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | | | |||||| | || ||| | ||| || |||| | | | ||||||||| | Sbjct 355321 AAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATA 355380 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || ||| ||| | ||| | ||| ||||| ||||| Sbjct 355381 AATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 355420 Score = 100 bits (110), Expect = 4e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||| || ||||||||||||||||||||||| | |||||||||||||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 78802 TAGCATAATCAGGATGTT 78819 |||||||||||||||||| Sbjct 357415 TAGCATAATCAGGATGTT 357432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/355 (66%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||||| ||| || |||| | |||| ||||||||| | |||| Sbjct 355747 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTTGATAGGATAAAAGTTAA 355806 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || || | ||||| ||||| | | || | ||| | || || |||||| | Sbjct 355807 CATCGATGACTTTATCTAGATTACGAGTGACGATTTTCGCGACTGTTTTAAGTTTATCGA 355866 Query 77644 AATCAAATCTTCCA---TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700 |||| || || | || |||| |||||||| | ||| |||||||||| ||| || | Sbjct 355867 AATCGAAAGTTTTAGTGTCATTAACGAACATGTTGACAGCGATAGATGCTAAATTGCATA 355926 Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760 | || || || || | |||| || || || || || | || || ||||||| Sbjct 355927 CAGCGACTTCTCCAGGACCCGAGTATTCAATAATTTCAGTGCACAAGTTGCTGCATTTGA 355986 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATAAAC 77819 |||||| | || || || || ||| |||| |||| || || ||||| ||| | Sbjct 355987 CAGTGCCTATATGCTGATGATTCGATTTTCGGTTGCAATGA-TCTTTGTAAAGCATATAA 356045 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 || || || ||||| | || ||| || ||| | ||| || |||||||| Sbjct 356046 GGTGTTCCAGTTTCTACTTGGGATCTGAGAATGGCGAGCCATACAGATCTAGCTT 356100 >seq1238 Length=3292682 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 48411 TAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468 ||||| || || | ||||| |||||| || || ||||||||||| || || || |||| Sbjct 3273246 TAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGAATATTTTCTATGGCAATTTGAA 3273303 Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528 | || || ||||| | ||||| | || | || || | |||| ||| | || Sbjct 3273304 AGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGAT 3273363 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588 ||||||| || || ||||| ||| |||||||||||||| ||||| |||||| || Sbjct 3273364 TCTCATTAACGATACCATCGGAAGCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTT 3273423 Query 48589 TTTCGTTGGAAGTCAGTTT---ATTCCAGTCATTGATATCTT 48627 | || | |||| | ||||| ||||||||| || | |||| Sbjct 3273424 TCTCATCGGAATTTAGTTTTTCATTCCAGTCCTTCTTGTCTT 3273465 >seq1170 Length=7610050 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || ||||||| | ||| ||||| |||||||||||||| |||| ||| ||||| || |||| Sbjct 7500301 CACCACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTA 7500242 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | |||||||| |||||||| || | ||| ||||| |||| || || ||| ||| Sbjct 7500241 AGGTTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTAT 7500182 Query 78859 CTAACTCTATAGTTGTGACCCCA 78881 | || || | ||||| || ||| Sbjct 7500181 CCAATTCACTTGTTGTCACTCCA 7500159 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 77356 ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA---GCTAGTTCACAACTCGCTTCCA 77412 |||| ||||| | |||||||| |||| ||||| |||| ||| ||||| ||||| | Sbjct 7502101 ATCC-TTATACGACTCATAAGGACCTT---TTTCAATAGCTATTTCGCAACTGGCTTCTA 7502046 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 || || ||||| | || || ||||| | | || || || | ||||| | || | Sbjct 7502045 GAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTTAAGTTCATTAGCTTCTTTGCTTT 7501986 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 |||| ||||| | | |||||| |||||||||||||| || || |||||||| Sbjct 7501985 CAAATGGATATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 7501931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655340792000