Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1492 123 4e-23 seq1238 113 6e-20 seq1170 95.1 2e-14 >seq1492 Length=1263116 Score = 123 bits (136), Expect = 4e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 75688 GGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCG 75747 ||||||| ||| || | ||| ||||| ||||| |||||||||||||||||| | | Sbjct 355175 GGTTAAATCTCGCAGTAAATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCT 355234 Query 75748 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807 || ||||| || ||||| ||||| | ||||| |||||||| ||||| || || || Sbjct 355235 CACATATATATTGCTTGTATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGT 355294 Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867 || || || ||||||||||| | || | | |||||| | || ||| | ||| || Sbjct 355295 CGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTT 355354 Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTG 75927 |||| | | | ||||||||| | || || ||| ||| | ||| | ||| ||||| Sbjct 355355 CGCTTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTG 355414 Query 75928 TAGAAT 75933 ||||| Sbjct 355415 GAGAAT 355420 Score = 122 bits (134), Expect = 1e-22 Identities = 191/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || ||||| || |||| | ||| | |||||||| | || || || ||||| || || Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 77033 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || |||||| || || ||| |||||||| || ||| || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || ||||| || | |||||||||||| ||||| | || || ||||| ||| ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTT 77209 || || ||| | | || | ||||||||||||| ||| || || ||||| || | Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTC 77238 ||||| || ||| | |||| ||||| || Sbjct 357116 TCGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || |||||||||||||||||||||| || |||||| |||||| ||| Sbjct 356235 GTATACAATTCTTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGA 356294 Query 76568 CACATCAATGACCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATC 76624 ||||| | | | | || | || || ||| || |||| |||||| ||||| |||||| Sbjct 356295 CACATTA--GGCTCCACATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATC 356351 Query 76625 CATAGAGCAATAAATAGATCTC 76646 |||||| | ||||| |||| Sbjct 356352 CATAGACCGTAAAATAAGTCTC 356373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| ||| || ||||||||||||||||| |||||| | ||||| |||||||| || Sbjct 357357 CTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTATA 357416 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| |||||||||| || | || || || |||| || || | | |||| | | Sbjct 357417 GCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAAGT 357476 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTA 77507 | ||||| ||||| ||||| || | || |||| || |||| Sbjct 357477 ATAACTGTAGTTACTCCAGAATATAAACCACGTATCACTTGAATCGCTA 357525 >seq1238 Length=3292682 Score = 113 bits (124), Expect = 6e-20 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| | Sbjct 3273261 AAAGA--ATACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAAC 3273318 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 |||||| | ||| | || ||| | |||| ||| | ||||||||| || || | Sbjct 3273319 GTGCTTCGGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATAC 3273378 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 |||| ||| ||||||||||| || ||||| |||||| ||| ||||||| | | | Sbjct 3273379 CATCGGAAGCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTA 3273438 Query 47093 GTTT---ATTCCAGTCATTGATATCTT 47116 |||| ||||||||| || | |||| Sbjct 3273439 GTTTTTCATTCCAGTCCTTCTTGTCTT 3273465 >seq1170 Length=7610050 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | ||| ||||| |||||||||||||| |||| || |||||||| |||| || Sbjct 7500296 CTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGGTT 7500237 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || |||||||| || | || ||||| |||| || || ||| |||| ||| Sbjct 7500236 GCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCAAT 7500177 Query 77459 TCTATAGTAGTAACTCC 77475 || | || || ||||| Sbjct 7500176 TCACTTGTTGTCACTCC 7500160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920586896000