Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1163 105 6e-18 seq1181 84.2 2e-11 >seq1163 Length=8263949 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| | || || |||||||||||| | ||| ||| | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | ||||| |||||| |||||||| || |||| ||||| Sbjct 3691855 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3691796 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || ||||||||| |||||||| | |||| | | ||||| || Sbjct 3691795 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3691736 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| ||||| || ||||| || || || || || || Sbjct 3691735 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 3691688 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| || || ||||| | ||||| ||||||||||| | ||| ||| | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || | | | |||||| ||||| || |||||||| |||| ||||| Sbjct 3692083 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692024 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || || |||||| |||||||| | |||| | |||| || || Sbjct 3692023 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3691964 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||||||||| || | || ||||||| || || || Sbjct 3691963 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3691916 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| || || ||||| | ||||| ||||||||||| | ||| ||| | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || | | | |||||| ||||| || |||||||| |||| ||||| Sbjct 3692311 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692252 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || || |||||| |||||||| | |||| | |||| || || Sbjct 3692251 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692192 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||||||||| || | || ||||||| || || || Sbjct 3692191 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692144 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| || || ||||| | ||||| |||||||| ||| | ||| ||| || Sbjct 3692827 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3692768 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | ||||| |||||| |||||||| || |||| ||||| Sbjct 3692767 TGACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3692708 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || |||||||||||||||||| || |||| | |||| || || Sbjct 3692707 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGACTACAA 3692648 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || | || ||||||| || || || Sbjct 3692647 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| | || || |||||||||||| | ||| ||| | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | ||||| |||||| |||||||| || |||| ||||| Sbjct 3692995 AGACACCATCGAAAACGTAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3692936 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || |||||||||||||||||| | |||| | |||| || || Sbjct 3692935 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692876 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || | || ||||||| || || || Sbjct 3692875 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || | || || |||||||| ||| | ||| ||| || Sbjct 3693282 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3693223 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | ||||| |||||| |||||||| || |||| |||||| Sbjct 3693222 GACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 3693163 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || |||| || |||||||||||||||||| || |||| | ||||||| || Sbjct 3693162 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAAC 3693103 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || | || ||||||| || || || Sbjct 3693102 ATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 3693056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| || || ||||| | ||||| ||||| ||||| | ||| ||| | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || | | | |||||| ||||| || |||||||| |||| ||||| Sbjct 3692539 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692480 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | || |||| || || |||||| |||||||| | |||| | |||| || || Sbjct 3692479 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692420 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| ||||| || | || ||||||| || || || Sbjct 3692419 CATTCAAAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 3692372 >seq1181 Length=949089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||||||| | ||||| ||||| || || ||||| ||| | Sbjct 810064 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810005 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || ||| |||||| ||||| ||||| | || || ||| Sbjct 810004 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGACCAA 809945 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111277 || ||| | || | || || |||||| | ||||| || | ||| | | || |||| Sbjct 809944 CAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTT--CTGACTATA 809887 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| || |||||||| ||| | ||||| || ||| | || ||||| || Sbjct 809886 ATATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGCGG 809838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||||||| | ||||| ||||| || || ||||| ||| | Sbjct 810520 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810461 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | || ||| |||||| ||||| ||||| | || || || Sbjct 810460 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810401 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111277 |||||| | || | || || |||||| | ||||| || | ||| | | || || | Sbjct 810400 CAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTT--CTGACTACA 810343 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| || || ||||| ||| | ||||| || ||| | || |||||||| Sbjct 810342 ATATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGG 810294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421803231722800