Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1181 113 3e-20 seq1163 113 3e-20 seq1153 107 1e-18 >seq1181 Length=949089 Score = 113 bits (124), Expect = 3e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || ||| | |||| || || ||| |||||||| || |||||||| Sbjct 811658 CATTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATC 811717 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || ||||||||||| || ||||| ||||||||||||||||| | Sbjct 811718 AGACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGG 811777 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| ||||| | |||| | |||||||| | | | Sbjct 811778 TGGGATGCCTTCTTTATCCTGGATCTT-TGCTTTTACGTTCTCGATGGTGTCAGAAGCCT 811836 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || | || || ||||| || || | ||||||||||| || |||||| || Sbjct 811837 CAACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGGTG 811892 >seq1163 Length=8263949 Score = 113 bits (124), Expect = 3e-20 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || |||||||| ||||| || |||||||| || | ||||| || | || | Sbjct 3693302 ACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCT-GC-CATCCT 3693359 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||||||||| || ||||||| ||| | |||||| || || Sbjct 3693360 CTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTT 3693419 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || | || ||||| | | ||||||||| | || || || | Sbjct 3693420 GGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTT 3693479 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| |||||||| || || ||||||||||||||| Sbjct 3693480 TTCCAGTGAGGGTTTTTACAAAGATTTGCATGATG 3693514 Score = 109 bits (120), Expect = 4e-19 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||| ||| || ||||| |||||||| Sbjct 3692365 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTA 3692424 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || ||||| || || ||||| || |||| |||||| ||| Sbjct 3692425 GTCGGAAAGAGTT--CTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGA 3692482 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 || | || | ||||| || ||| || || |||| | | || | || ||||| | Sbjct 3692483 TCCGGTGGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTTACGTTTTCGATAGTGTCTGA 3692541 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || ||||| || ||||||||||||||||| Sbjct 3692542 AGCTTCGACTTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||||||| || || || |||||||| Sbjct 3692593 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTA 3692652 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || |||| || || ||||| || |||| |||||| ||| Sbjct 3692653 GTCGGAAAGAGTT--CTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGA 3692710 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || || || ||| || || ||| | || |||| ||||| | | Sbjct 3692711 TCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAG 3692770 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || || || || ||||| || ||||||||||||||||| Sbjct 3692771 GCTTCAACTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Score = 104 bits (114), Expect = 2e-17 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||| || || ||||| |||||||| Sbjct 3691909 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTA 3691968 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || ||||| || || ||||| || |||| |||||| ||| Sbjct 3691969 GTCGGAAAGAGTT--CTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGA 3692026 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 || | || | ||||| || ||| || || |||| | | || | || ||||| | Sbjct 3692027 TCCGGTGGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTTACGTTTTCGATAGTGTCTGA 3692085 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || ||||| || ||||||||||||||||| Sbjct 3692086 AGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 104 bits (114), Expect = 2e-17 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||| || || ||||| |||||||| Sbjct 3692137 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTA 3692196 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || ||||| || || ||||| || |||| |||||| ||| Sbjct 3692197 GTCGGAAAGAGTT--CTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGA 3692254 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 || | || | ||||| || ||| || || |||| | | || | || ||||| | Sbjct 3692255 TCCGGTGGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTTACGTTTTCGATAGTGTCTGA 3692313 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || ||||| || ||||||||||||||||| Sbjct 3692314 AGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 102 bits (112), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||||||| || || || |||||||| Sbjct 3693049 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTA 3693108 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| ||||| | | || |||| || || ||||| || |||| |||||| ||| Sbjct 3693109 ATCGGAAAGAGTT--CTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGA 3693166 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || || || ||| || || ||| | || |||| ||||| | | Sbjct 3693167 TCCGGTGGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAG 3693226 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| || || | || || || || ||||| || ||||| || ||||| |||||| Sbjct 3693227 GCTTCAACTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 3693283 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||||||| || || || |||||||| Sbjct 3692821 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTA 3692880 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | | || |||| || || ||||| || |||| |||||| ||| Sbjct 3692881 GTCGGAAAGAGTT--CTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGA 3692938 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || || || ||| || || ||| | || | |||||||| | Sbjct 3692939 TCCGGTGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAA 3692998 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || ||||| || |||||||| |||||||| Sbjct 3692999 GCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGC 44177 |||| || || | ||| || ||| || ||||||||||||||||| | ||||| | Sbjct 3691697 AGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT--C 3691754 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 | || ||||| || || ||||| || |||| |||||| ||||| | || | || | Sbjct 3691755 TGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCT 3691814 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 | || ||| || || ||| | || | |||||||| | | ||| || || | | Sbjct 3691815 CTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGG 3691874 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || ||||| || |||||||| |||||||| Sbjct 3691875 TAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 >seq1153 Length=2037154 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||||||||||||||||| | ||| | || |||||||| || ||||| ||||| Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 | ||||| ||||||| || | || ||||| ||| ||||| ||| | | | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||||| || | || || ||||| | ||||| || || ||||| ||||| ||||||||| Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 44330 ATTTGCATGATG 44341 || |||||| || Sbjct 1924141 ATCTGCATGGTG 1924152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983599556350