Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 224 1e-53
seq7143 120 3e-22
>seq7155
Length=3116674
Score = 224 bits (248), Expect = 1e-53
Identities = 426/623 (68%), Gaps = 12/623 (2%)
Strand=Plus/Plus
Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837
||||| ||| | | || | ||| || |||||||| ||||| | | |||||| || |||
Sbjct 2758574 CCCAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 2758633
Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897
||||| || || | | ||||| | ||| || || || ||| ||||| || |||
Sbjct 2758634 TTCATACCGATTAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 2758693
Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957
||||| ||| || | ||| || || | ||| | ||| | | ||||| |||
Sbjct 2758694 GCTTCAGAAATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAAC 2758753
Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
|||| ||||||||| || ||||| | |||||| |||| || ||||| || ||||||
Sbjct 2758754 ATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAAT 2758813
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
||||| || ||||| || |||||||| | ||| || |||| || || |||
Sbjct 2758814 GTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTG 2758873
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136
||||| ||||| || |||| ||||| || |||| ||||| | | | || | |||
Sbjct 2758874 AAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTC 2758933
Query 17137 GTTACGAA-TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
| | ||| |||| || |||| || || || |||||| | | ||| || ||||
Sbjct 2758934 G--AGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTA 2758991
Query 17196 TGGCCTTAAATAA----TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251
| || || ||||| || || | |||| || | | ||||| ||||| || | |
Sbjct 2758992 TAGCATTGAATAAGTAATTCCTTTGTTTCGAGT----CCTTAATATATGTATCAATTAAT 2759047
Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311
| ||| |||||||| || || | |||||||| || || |||||||| || ||||| ||
Sbjct 2759048 ATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGT 2759107
Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371
|| || | | ||| |||||| | |||| ||||| ||| |||||| ||||| || ||
Sbjct 2759108 GCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCA 2759167
Query 17372 TCGCTCGCGGCGAAAAACGCCAA 17394
|| ||||||||||| || ||
Sbjct 2759168 TCAGATGCGGCGAAAAAGGCTAA 2759190
>seq7143
Length=2789641
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919
||||| || ||||||| ||| | |||||||| ||||| || ||||| || || ||
Sbjct 1275191 CCCACATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCATTTAAATAAATTGCA 1275132
Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979
| || | |||| ||| || | || | |||||||||||| ||||| ||||| ||| |
Sbjct 1275131 GTTTCT-AGCGCAGCTTCTGGTGACTTGGACCATTCCAGTATCTTTTTGGCCCAATACTT 1275073
Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039
||| | |||| |||||||| ||||||||||||| ||| ||||| || || ||||| |
Sbjct 1275072 ACGAAGAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTAGTTGAGCTGCATTCCAGAG 1275013
Query 120040 GGGATCGTGTGTA 120052
| ||| ||||||
Sbjct 1275012 GTCATCATGTGTA 1275000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517499240852880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |