Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7155 224 1e-53 seq7143 120 3e-22 >seq7155 Length=3116674 Score = 224 bits (248), Expect = 1e-53 Identities = 426/623 (68%), Gaps = 12/623 (2%) Strand=Plus/Plus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 ||||| ||| | | || | ||| || |||||||| ||||| | | |||||| || ||| Sbjct 2758574 CCCAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 2758633 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | ||||| | ||| || || || ||| ||||| || ||| Sbjct 2758634 TTCATACCGATTAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 2758693 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||| || | ||| || || | ||| | ||| | | ||||| ||| Sbjct 2758694 GCTTCAGAAATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAAC 2758753 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| ||||||||| || ||||| | |||||| |||| || ||||| || |||||| Sbjct 2758754 ATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAAT 2758813 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || ||||| || |||||||| | ||| || |||| || || ||| Sbjct 2758814 GTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTG 2758873 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTT 17136 ||||| ||||| || |||| ||||| || |||| ||||| | | | || | ||| Sbjct 2758874 AAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTC 2758933 Query 17137 GTTACGAA-TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | | ||| |||| || |||| || || || |||||| | | ||| || |||| Sbjct 2758934 G--AGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTA 2758991 Query 17196 TGGCCTTAAATAA----TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 | || || ||||| || || | |||| || | | ||||| ||||| || | | Sbjct 2758992 TAGCATTGAATAAGTAATTCCTTTGTTTCGAGT----CCTTAATATATGTATCAATTAAT 2759047 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | ||| |||||||| || || | |||||||| || || |||||||| || ||||| || Sbjct 2759048 ATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGT 2759107 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | | ||| |||||| | |||| ||||| ||| |||||| ||||| || || Sbjct 2759108 GCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCA 2759167 Query 17372 TCGCTCGCGGCGAAAAACGCCAA 17394 || ||||||||||| || || Sbjct 2759168 TCAGATGCGGCGAAAAAGGCTAA 2759190 >seq7143 Length=2789641 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 ||||| || ||||||| ||| | |||||||| ||||| || ||||| || || || Sbjct 1275191 CCCACATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCATTTAAATAAATTGCA 1275132 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 | || | |||| ||| || | || | |||||||||||| ||||| ||||| ||| | Sbjct 1275131 GTTTCT-AGCGCAGCTTCTGGTGACTTGGACCATTCCAGTATCTTTTTGGCCCAATACTT 1275073 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 ||| | |||| |||||||| ||||||||||||| ||| ||||| || || ||||| | Sbjct 1275072 ACGAAGAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTAGTTGAGCTGCATTCCAGAG 1275013 Query 120040 GGGATCGTGTGTA 120052 | ||| |||||| Sbjct 1275012 GTCATCATGTGTA 1275000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499240852880