Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7155 277 2e-69 seq7084 230 3e-55 >seq7155 Length=3116674 Score = 277 bits (306), Expect = 2e-69 Identities = 395/554 (71%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 |||||||| ||||||||||||||||| || || || || ||||| |||| ||||| Sbjct 2758741 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 2758800 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 2758801 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 2758860 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| ||| ||||| || ||||| || || ||||| ||||| | | ||| ||| | Sbjct 2758861 AAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 2758920 Query 24296 ACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||| || | | | |||| | |||||||| ||||| ||||| ||| Sbjct 2758921 GTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGG 2758980 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 |||||||||||||||||| || | || || ||| || || |||| ||||||||| Sbjct 2758981 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 2759040 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 ||| || | ||||||||||| ||||| | || || || || ||||||||||| ||||| Sbjct 2759041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 2759100 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 || | ||||| || | || ||||| || || ||||| ||| |||||||||||| Sbjct 2759101 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCAC 2759160 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || || ||| || || ||||| || || || ||| ||||||| | ||| | Sbjct 2759161 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 2759220 Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 || || |||||||| ||||||||||| | ||| ||||| || |||||||| || Sbjct 2759221 AGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280 Query 24653 TGATGCCTCTGCCT 24666 ||||| ||||||| Sbjct 2759281 CGATGCTTCTGCCT 2759294 >seq7084 Length=1258986 Score = 230 bits (254), Expect = 3e-55 Identities = 600/895 (67%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 ||| ||||| | || || || || | |||||||||||| || || || | ||| |||| Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 ||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | | Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACAC-GAGCCTTTATTATAG-ATTTGTATCTCTT 53922 | ||||| ||||| ||| | | ||| | || |||||| | ||| | | || | Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 | || || | ||| ||| || ||| ||||| || ||||| || | | || || Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 54039 ||||| | | |||||||| | |||||| ||| ||||| |||| || |||||||| Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 ||| |||||||| ||||| | || ||| || | |||||||| | ||| || || || | Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 | || || || || | ||| | || | | |||||||| |||||| ||||| | ||| | Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | || |||||||| | || ||||| | || | || | ||||| Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTT 54277 | |||| |||||| || | | |||||| ||| | ||| || |||| | | || | Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TG 2792 Query 54278 CCACTGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 || | || || || || ||| || ||||| || || || || ||| || || Sbjct 2793 CCTTTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAAT 2848 Query 54334 TAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 ||||| ||| | | | | | | | | || || || || ||| |||| |||| | | Sbjct 2849 CAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCA 2907 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 ||||||| || |||| ||| | | |||| | ||| || | || ||||||| Sbjct 2908 GTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAG 2967 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || ||||| | ||| ||||| | ||||| || ||||| |||| || || || Sbjct 2968 CATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTT 3027 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 ||| || || | || |||||||||||||| ||||| |||| ||||| || ||| Sbjct 3028 CGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 3087 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 || | || ||||| ||||| ||| | ||||||||||||||||| || || Sbjct 3088 CATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 196 bits (216), Expect = 6e-45 Identities = 441/656 (67%), Gaps = 15/656 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| ||| Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || || ||| ||| | || || || | || || || | || ||||| Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||||||||| || || | |||||||||||||| || || || | ||| ||| Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750 Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATAGA 53064 |||| |||||| || | |||| || | | | ||| | || || ||| || || || Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 || | | ||||| |||| || || ||||||| ||| || |||||||| Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869 Query 53125 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | | | ||| || || |||| || ||||||||||| || || | || | || || | Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 |||||||| || |||||||| | |||||||| || |||| ||||||||||||||| | Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 53301 |||| ||||| || || | || ||| || | | ||| ||||| | ||||| || Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046 Query 53302 TTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 || | ||| ||||||||||||||| | ||| ||| Sbjct 2047 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 2104 Query 53360 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 | |||||| ||||| || || ||| ||| || || || | || | || |||||| Sbjct 2105 AAAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCT 2164 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 | ||| ||||| || || ||||| || || ||||| |||||||| || | || ||| Sbjct 2165 AATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593668417387680