Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 277 2e-69
seq7084 230 3e-55
>seq7155
Length=3116674
Score = 277 bits (306), Expect = 2e-69
Identities = 395/554 (71%), Gaps = 3/554 (1%)
Strand=Plus/Plus
Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175
|||||||| ||||||||||||||||| || || || || ||||| |||| |||||
Sbjct 2758741 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 2758800
Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235
||| |||||||| || | || ||||||| ||||| || |||||||| || || || ||
Sbjct 2758801 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 2758860
Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295
||| ||| ||||| || ||||| || || ||||| ||||| | | ||| ||| |
Sbjct 2758861 AAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 2758920
Query 24296 ACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352
||| || | | | |||| | |||||||| ||||| ||||| |||
Sbjct 2758921 GTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGG 2758980
Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412
|||||||||||||||||| || | || || ||| || || |||| |||||||||
Sbjct 2758981 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 2759040
Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472
||| || | ||||||||||| ||||| | || || || || ||||||||||| |||||
Sbjct 2759041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 2759100
Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532
|| | ||||| || | || ||||| || || ||||| ||| ||||||||||||
Sbjct 2759101 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCAC 2759160
Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592
|| || ||| || || ||||| || || || ||| ||||||| | ||| |
Sbjct 2759161 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 2759220
Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652
|| || |||||||| ||||||||||| | ||| ||||| || |||||||| ||
Sbjct 2759221 AGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280
Query 24653 TGATGCCTCTGCCT 24666
||||| |||||||
Sbjct 2759281 CGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 230 bits (254), Expect = 3e-55
Identities = 600/895 (67%), Gaps = 24/895 (3%)
Strand=Plus/Plus
Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804
||| ||||| | || || || || | |||||||||||| || || || | ||| ||||
Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319
Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864
||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | |
Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379
Query 53865 GGGATTCTATAATCGCTTTCCAGACGACAC-GAGCCTTTATTATAG-ATTTGTATCTCTT 53922
| ||||| ||||| ||| | | ||| | || |||||| | ||| | | || |
Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438
Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982
| || || | ||| ||| || ||| ||||| || ||||| || | | || ||
Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497
Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 54039
||||| | | |||||||| | |||||| ||| ||||| |||| || ||||||||
Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554
Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098
||| |||||||| ||||| | || ||| || | |||||||| | ||| || || || |
Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613
Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158
| || || || || | ||| | || | | |||||||| |||||| ||||| | ||| |
Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673
Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218
||| | | || |||||||| | || ||||| | || | || | |||||
Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733
Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTT 54277
| |||| |||||| || | | |||||| ||| | ||| || |||| | | || |
Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TG 2792
Query 54278 CCACTGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333
|| | || || || || ||| || ||||| || || || || ||| || ||
Sbjct 2793 CCTTTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAAT 2848
Query 54334 TAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392
||||| ||| | | | | | | | | || || || || ||| |||| |||| | |
Sbjct 2849 CAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCA 2907
Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452
||||||| || |||| ||| | | |||| | ||| || | || |||||||
Sbjct 2908 GTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAG 2967
Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512
| || ||||| | ||| ||||| | ||||| || ||||| |||| || || ||
Sbjct 2968 CATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTT 3027
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
||| || || | || |||||||||||||| ||||| |||| ||||| || |||
Sbjct 3028 CGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 3087
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627
|| | || ||||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 3088 CATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 196 bits (216), Expect = 6e-45
Identities = 441/656 (67%), Gaps = 15/656 (2%)
Strand=Plus/Plus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888
|| ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| |||
Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630
Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948
|| ||| || || ||| ||| | || || || | || || || | || |||||
Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690
Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008
||||||||||| || || | |||||||||||||| || || || | ||| |||
Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750
Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATAGA 53064
|||| |||||| || | |||| || | | | ||| | || || ||| || || ||
Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809
Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124
|| | | ||||| |||| || || ||||||| ||| || ||||||||
Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869
Query 53125 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183
| | | ||| || || |||| || ||||||||||| || || | || | || || |
Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928
Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243
|||||||| || |||||||| | |||||||| || |||| ||||||||||||||| |
Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988
Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 53301
|||| ||||| || || | || ||| || | | ||| ||||| | ||||| ||
Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046
Query 53302 TTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359
|| | ||| ||||||||||||||| | ||| |||
Sbjct 2047 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 2104
Query 53360 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419
| |||||| ||||| || || ||| ||| || || || | || | || ||||||
Sbjct 2105 AAAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCT 2164
Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475
| ||| ||||| || || ||||| || || ||||| |||||||| || | || |||
Sbjct 2165 AATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593668417387680
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