Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7155 188 7e-43 seq7156 118 1e-21 seq7104 113 5e-20 >seq7155 Length=3116674 Score = 188 bits (208), Expect = 7e-43 Identities = 378/555 (68%), Gaps = 4/555 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || ||||||||||| || ||||| || || || || || || | | || | Sbjct 2759294 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 2759235 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | || || || || ||||| || |||||| | ||||||||||||| Sbjct 2759234 GGGCACGTCTCACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCCG 2759175 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || || || || || || ||| | || || |||||| ||||| || || ||| Sbjct 2759174 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGTTTCTGCCAGGAAGTCCAAGTGA 2759115 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| || ||||| || || |||||||| ||||| || ||||||| Sbjct 2759114 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 2759055 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 || | | || || || || | ||| | | | | || || || | Sbjct 2759054 ATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAATG 2758995 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | || ||||| ||||| ||| |||| | ||||| || |||||||| ||||| || Sbjct 2758994 CTATAGAGACAATGCC-TGCCGTAAAGCGCAAGGCAGATTGGGCGCTTGCTTGGATTTCC 2758936 Query 117014 -GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | || | ||| ||| || || || | | || || || ||||| || || |||| Sbjct 2758935 TCGAAGTCA-GCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATCTT 2758877 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||| |||||||| || | || || ||||| |||||||| || | ||||| ||| | Sbjct 2758876 CTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTT 2758817 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 ||| || ||| || || || || | || ||||| || ||||| ||||| || ||||| Sbjct 2758816 GACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTT 2758757 Query 117193 GCTGTTCAAGCATTT 117207 | ||||| | ||||| Sbjct 2758756 GATGTTCCAACATTT 2758742 >seq7156 Length=3407544 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| | || || || ||||||||| | || ||||| | Sbjct 1526737 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCT 1526678 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||| | ||||| | ||||||||||| |||||| | || Sbjct 1526677 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGAT 1526618 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| ||| || ||||| |||| || | |||||| | ||||||| Sbjct 1526617 CAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTAC 1526558 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||||| | || || ||| | || |||| Sbjct 1526557 AACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCG 1526520 >seq7104 Length=1453772 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 421934 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 421993 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | || |||| |||||||| || |||||| | || Sbjct 421994 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 422053 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || || ||||| ||||| |||| ||||| || ||| ||| Sbjct 422054 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 422113 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||||| | || || ||| Sbjct 422114 AACATCCAGAAGGAGTCTACACTTCAT 422140 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| | || || || | || Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||||| || || || || |||||| | || || Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||| |||| || | ||||| || |||||| || Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || |||||||| |||| || ||| |||| | ||||| Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTT 422382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515173049240160