Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq7133 167 4e-36
seq3141 138 2e-27
seq7104 136 6e-27
seq7156 102 1e-16
>seq7133
Length=2056560
Score = 167 bits (184), Expect = 4e-36
Identities = 405/608 (67%), Gaps = 19/608 (3%)
Strand=Plus/Minus
Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418
||| |||| ||||||| | | |||||||||| ||| | |||||||| || | | | ||
Sbjct 1569251 TAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAAAGTGTG 1569192
Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478
| || || |||| | || ||| | ||| ||||||||||| || | ||| ||
Sbjct 1569191 GACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAAAGCGTA 1569132
Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538
|||| ||||||||||||||| || |||||||| || | ||| || | |||||
Sbjct 1569131 CGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAATTGAC- 1569073
Query 205539 TGTAAGATATTTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597
|||||| | | ||| ||| ||||||| ||| ||||||||||||||||| |
Sbjct 1569072 ---AAGATAACTCTCCATTGGCAACAAAAAATTGTGCAAGACAATGACAAGGTGGTAGAG 1569016
Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657
|||| | | ||| | ||||||||| || | | ||| ||| || | | || |
Sbjct 1569015 CCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCATTTGGAT 1568956
Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA-TTT 205716
||||| | ||| | | || | || | |||||| | || | || | | ||| | |
Sbjct 1568955 TATTTCTGATTGTGTCAATTACTTGCTGAAGTTGATCTATACCCTCATCTTTGTAACTGT 1568896
Query 205717 GTATCCA-TATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775
| | || | || | || || || |||||||||||||| ||||||||||||||||| ||
Sbjct 1568895 CTTTGCAGTTTC--TGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAACTGGGCC 1568838
Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatatt-----ttaatgat 205830
|| ||||||||| | ||||| ||| || | ||| | || | | ||| ||
Sbjct 1568837 TAGATCACCTTCCTCCCTATCGGAAAATCCGCATTTGTCTAAGAACTCCCGATTACTG-- 1568780
Query 205831 ccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCA 205890
||| ||||||| || || || ||| | || || || || | | ||| |||
Sbjct 1568779 ---TTTCCATCCCATATGTGAATATTTTTTTCTTGAAGTATTTTAGCGTCTGTTTTACCA 1568723
Query 205891 GATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAAT 205950
| |||||| | ||||||||| | | | | |||||| | | ||||| || | |
Sbjct 1568722 TGAACAAACCACAGCAATTCTTCAGCGACAGCACGCCAAAATACTCGCTTTGTAGTTAGT 1568663
Query 205951 AATGGAAA 205958
||||||||
Sbjct 1568662 AATGGAAA 1568655
>seq3141
Length=2848
Score = 138 bits (152), Expect = 2e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596
|||||||||| || |||| || || || || || || || ||| | ||| |||| |
Sbjct 1342 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 1401
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||| ||| || | || |||||||||||||| ||||| || || |||||||
Sbjct 1402 CGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATC 1461
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
|||| | || ||||| || ||||| ||||| || ||| |||| ||||| | || ||||
Sbjct 1462 AACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 1521
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||||||| ||||| || || |||||||| || | ||| | |||||||
Sbjct 1522 ATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570
>seq7104
Length=1453772
Score = 136 bits (150), Expect = 6e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || | || || ||||| || ||| | ||| |||| |
Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| | ||| |||||||||||||| ||||| || || || ||||||
Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | ||||| || || ||||| || |||||| | || ||| | || ||||||
Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || ||||| ||| | ||||| ||| |||| ||||| ||||||||
Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 422394
>seq7156
Length=3407544
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || |||| || || || || || ||||| | || |
Sbjct 1526735 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 1526676
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || ||| | ||| ||||| ||||| ||||| ||||| || || |||||
Sbjct 1526675 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCA 1526616
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | || || || ||||||||||| || ||| |||| || || || || ||
Sbjct 1526615 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 1526556
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || ||||| | ||||||||| | ||| | || ||||||||
Sbjct 1526555 CATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 1526505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755388330028800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |