Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7133 167 4e-36 seq3141 138 2e-27 seq7104 136 6e-27 seq7156 102 1e-16 >seq7133 Length=2056560 Score = 167 bits (184), Expect = 4e-36 Identities = 405/608 (67%), Gaps = 19/608 (3%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418 ||| |||| ||||||| | | |||||||||| ||| | |||||||| || | | | || Sbjct 1569251 TAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAAAGTGTG 1569192 Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 | || || |||| | || ||| | ||| ||||||||||| || | ||| || Sbjct 1569191 GACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAAAGCGTA 1569132 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 |||| ||||||||||||||| || |||||||| || | ||| || | ||||| Sbjct 1569131 CGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAATTGAC- 1569073 Query 205539 TGTAAGATATTTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597 |||||| | | ||| ||| ||||||| ||| ||||||||||||||||| | Sbjct 1569072 ---AAGATAACTCTCCATTGGCAACAAAAAATTGTGCAAGACAATGACAAGGTGGTAGAG 1569016 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657 |||| | | ||| | ||||||||| || | | ||| ||| || | | || | Sbjct 1569015 CCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCATTTGGAT 1568956 Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA-TTT 205716 ||||| | ||| | | || | || | |||||| | || | || | | ||| | | Sbjct 1568955 TATTTCTGATTGTGTCAATTACTTGCTGAAGTTGATCTATACCCTCATCTTTGTAACTGT 1568896 Query 205717 GTATCCA-TATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775 | | || | || | || || || |||||||||||||| ||||||||||||||||| || Sbjct 1568895 CTTTGCAGTTTC--TGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAACTGGGCC 1568838 Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatatt-----ttaatgat 205830 || ||||||||| | ||||| ||| || | ||| | || | | ||| || Sbjct 1568837 TAGATCACCTTCCTCCCTATCGGAAAATCCGCATTTGTCTAAGAACTCCCGATTACTG-- 1568780 Query 205831 ccattttcatcccaaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCA 205890 ||| ||||||| || || || ||| | || || || || | | ||| ||| Sbjct 1568779 ---TTTCCATCCCATATGTGAATATTTTTTTCTTGAAGTATTTTAGCGTCTGTTTTACCA 1568723 Query 205891 GATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAAT 205950 | |||||| | ||||||||| | | | | |||||| | | ||||| || | | Sbjct 1568722 TGAACAAACCACAGCAATTCTTCAGCGACAGCACGCCAAAATACTCGCTTTGTAGTTAGT 1568663 Query 205951 AATGGAAA 205958 |||||||| Sbjct 1568662 AATGGAAA 1568655 >seq3141 Length=2848 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| || |||| || || || || || || || ||| | ||| |||| | Sbjct 1342 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 1401 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| || | || |||||||||||||| ||||| || || ||||||| Sbjct 1402 CGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATC 1461 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | || ||||| || ||||| ||||| || ||| |||| ||||| | || |||| Sbjct 1462 AACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 1521 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||| ||||| || || |||||||| || | ||| | ||||||| Sbjct 1522 ATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570 >seq7104 Length=1453772 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | ||| |||| | Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| |||||||||||||| ||||| || || || |||||| Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| || |||||| | || ||| | || |||||| Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| | ||||| ||| |||| ||||| |||||||| Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 422394 >seq7156 Length=3407544 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || || || || || ||||| | || | Sbjct 1526735 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 1526676 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 1526675 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCA 1526616 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| |||| || || || || || Sbjct 1526615 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 1526556 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | ||||||||| | ||| | || |||||||| Sbjct 1526555 CATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 1526505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755388330028800