Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq7141 93.3 6e-14
seq3141 86.0 9e-12
>seq7141
Length=2858276
Score = 93.3 bits (102), Expect = 6e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 10407 AAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCT 10466
|| |||||||| || || |||| | |||| ||| | | | | || || | |||
Sbjct 159681 AAGACTGATTTGCAAGTACAAGTTCCAGAGGGATCTTACGGACGTGTCGCGCCACGCTCT 159740
Query 10467 GATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGA 10526
| ||||| | || || ||||| ||| |||| |||||||| | || ||||| || |
Sbjct 159741 GGACTAGCTGTTAAGAACTTTATAGATGTTGGTGCTGGAGTCGTAGATGAAGACTACCGT 159800
Query 10527 GGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGA 10586
|| || |||| || |||||||||||||||| |||||||||| | | || |||||
Sbjct 159801 GGTAACTTGGGTGTTGTATTATTTAATCATTCAGATGAAGATTTCGAAGTGAAACGAGGA 159860
Query 10587 GATAGAATATCTCAATTAATATGTGA 10612
|| | || ||||||| || |||||
Sbjct 159861 GACCGCATTGCTCAATTTATCTGTGA 159886
>seq3141
Length=2848
Score = 86.0 bits (94), Expect = 9e-12
Identities = 151/228 (66%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||||||||| | | ||| ||||| || ||||| ||||| |||||||| || |
Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || ||||| ||||| || ||||| | | || ||||| || |||
Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||| |||||||| |||||| ||| || ||
Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1391
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| || ||||| || ||||| || | ||||| | ||| |||||||||
Sbjct 1390 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743459798622720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |