Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7104 82.4 5e-11 >seq7104 Length=1453772 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 |||| ||| ||| ||||| || || ||||||||||| || | || |||||||| Sbjct 422367 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 422308 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 ||||| |||||||| | || || || || ||| | | ||||| || || ||| Sbjct 422307 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTT 422249 Query 34307 TGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 ||||| | || | || | ||||| | || || |||| ||||||||||| || || Sbjct 422248 AGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 422189 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 | |||||| || || |||||||| Sbjct 422188 CAAAGTTTTGACGAAAATCTGCAT 422165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323043784304960