Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7155 214 2e-50 >seq7155 Length=3116674 Score = 214 bits (236), Expect = 2e-50 Identities = 477/706 (68%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| ||||||||||| ||||| | ||||| | || ||||| || ||||| || || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | || || ||||| || | | || || ||||| |||||| ||||| || Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 16189 TACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| || ||| | || || ||| |||| ||||| | ||| || || |||| Sbjct 2758714 AA-TACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 2758772 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| | ||| || || | |||| || || |||||||| | |||||||||| | Sbjct 2758773 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 2758832 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | ||||| |||| ||| || || | ||||| ||| ||||| ||||||||||| | Sbjct 2758833 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAACGG 2758892 Query 16368 CGGCAAATGCAACCAATCGCTCACCGTACGTT--CT-Atttttactttctatccattttt 16424 | |||||||||| | || ||||| | ||| || | || | ||||| Sbjct 2758893 CAGCAAATGCAATTACACGTTCACCAAA-GTTGGCTGACTTCGAGGAA--ATCCAAGCAA 2758949 Query 16425 tagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 ||||||| ||| || | || || ||| ||| ||||||| ||||| ||||| ||| Sbjct 2758950 GCGCCCAATCTGCCTTGCGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGTAA 2759008 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 || ||| ||| || |||||| ||||| |||| || ||||||||||| ||||| Sbjct 2759009 TTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 2759068 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 | ||||||||| || || ||||| ||||| ||||| | || || | | ||| ||||| Sbjct 2759069 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 2759128 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | | || | ||| ||| ||||| || || || ||||| || || ||||| || Sbjct 2759129 TGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 2759188 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 | | |||| |||||||| | ||| ||||| | || | ||| ||| | |||| Sbjct 2759189 AACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCT 2759248 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 || || | ||| || || ||||| ||||| || || || | |||| Sbjct 2759249 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462470570487600