Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7084 264 1e-65 seq7155 233 2e-56 seq7104 109 5e-19 seq3141 98.7 9e-16 >seq7084 Length=1258986 Score = 264 bits (292), Expect = 1e-65 Identities = 473/689 (69%), Gaps = 9/689 (1%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || ||||| ||||| ||||| || ||||| || ||||| || || | ||||||||||||| Sbjct 1541 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 1600 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| ||||| |||||| |||| |||||||| || || | || ||||| | ||| Sbjct 1601 GTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGGC 1660 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 ||| || | ||||||||||||||||||||||| || || || ||||| || ||| Sbjct 1661 TCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGCC 1720 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || ||| | || || || || ||||| || || ||||| || | | || | Sbjct 1721 ATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 1780 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 ||||| ||||| || || | ||| ||| | || ||| || |||||| || Sbjct 1781 TGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCATA 1840 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 ||| | ||||||||| | |||| | ||| | || ||| | || || |||||| Sbjct 1841 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAACTTGA 1900 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 || || || || | || || ||| ||||| || || ||| ||||||| || || ||| Sbjct 1901 AATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGACTCA 1960 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| |||| || ||||| || ||||| || ||||| ||||| | ||| | ||||| Sbjct 1961 TTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTG 2020 Query 22586 CTCAAGCC---GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 | | || |||||| ||||| ||| | | ||| | ||| ||||| | Sbjct 2021 CGGATACCATGTTGCTTT---ATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 2077 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || |||||||| || || || || | || ||| | || |||| Sbjct 2078 GGTGT---TTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTA 2134 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 |||||||| || | |||||| | | || | |||||| || || ||||| ||||| || Sbjct 2135 TACGTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAG 2194 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAA 22791 || ||||| ||||| |||| || ||||| Sbjct 2195 TAAATAGTTTCGAATATTTGCTGATTCAA 2223 Score = 221 bits (244), Expect = 1e-52 Identities = 589/890 (66%), Gaps = 24/890 (3%) Strand=Plus/Plus Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 || || |||||||||||||||| ||| |||||||| || ||||| | ||| || || Sbjct 2265 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 2324 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || |||||||| || | ||| || || | |||||| || ||||| ||||| || ||||| Sbjct 2325 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 2384 Query 23186 TCGATGATCGCTCG-CCACATAGTCTGAGCGTGAACACG-----TCGCACGTACCTGCCT 23239 || || || ||| ||| | | | || || | | | |||||| ||| Sbjct 2385 TCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGT-----CCT 2438 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || | || || || | || ||| || || || |||| | || | ||| Sbjct 2439 TCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCG 2498 Query 23300 GGCGA-TTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || | ||| | |||||||| || ||| | || ||| || ||| ||||||| Sbjct 2499 GGACACTTGTGT-GGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAA 2557 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| |||||||| | || ||||||| || | ||| || ||| ||||| || || Sbjct 2558 TAGATCAGGTATCCACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGT 2617 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 ||| || |||||||||||||| || || | || |||||||| || |||||||| | ||| Sbjct 2618 GTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGC 2677 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 ||| ||||| || | ||| || || ||||| || || || || | || ||| |||| Sbjct 2678 AAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACAC 2737 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598 || | ||| ||||| | ||| || || || | ||||| | | ||||| Sbjct 2738 TCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTT 2797 Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 ||| || | | || |||| | ||| || || || | ||||| || |||| || || Sbjct 2798 TGCGCGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACA 2857 Query 23659 TTG--TTTCAGAGTGTCGTAGATGCCCTCGATG---CTGTCCTCTTTGGTCGCGACCAAG 23713 ||| | |||| ||| | | || || || ||| |||| | ||||| | | Sbjct 2858 TTGATGTGCAGA-TGT-GAAAATACCATCAATGGAATCGTCCACCATGGTC---AGTAGA 2912 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || || |||| ||||| | || || || | ||| || || || || || Sbjct 2913 AAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGT 2972 Query 23774 GTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCG 23833 ||||| || | | || | | ||||| || ||||| || ||||| ||||| || || Sbjct 2973 GTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCA 3032 Query 23834 TGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTA 23893 |||||||||||||| || ||||| | ||| | || |||| ||| || | ||| || Sbjct 3033 TGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTC 3092 Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 | || | || ||| ||||||| | |||||||| |||||||| | ||| Sbjct 3093 AACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 >seq7155 Length=3116674 Score = 233 bits (258), Expect = 2e-56 Identities = 387/551 (70%), Gaps = 16/551 (3%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||||||||||||||| ||||| || || |||||||| || ||||| ||| || |||| Sbjct 2759294 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 2759235 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| |||| || ||| || |||||||| ||||||||| || |||||||||| Sbjct 2759234 GGGCACGTCTCACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCCG 2759175 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 |||| ||||||||||| || || ||| | || ||| | || | || ||||| ||||||| Sbjct 2759174 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGTTTCTGCCAGGAAGTCCAAGTGA 2759115 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | ||||| | ||||| || ||||||||| | || || || || |||||||| ||||||| Sbjct 2759114 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 2759055 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTA-GAC-TGTTCAA 57886 || || | || ||||| || | |||||| ||| | ||| | | || | ||||| Sbjct 2759054 ATAGCATATTAATTGATACATATATTAAGGAC-TCGA-AACAAAGGAATTACTTATTCAA 2758997 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGGAT 57943 || || || |||||||| || || ||| |||||||| ||| | | ||||| Sbjct 2758996 TGCTATAGAGACAATGCCTGC---CGTAAAGCGCAAGGCAGATTGGGCGCTTGCTTGGAT 2758940 Query 57944 AAAAAGCGCCA---CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 | | | | |||| || | || | |||| || || || ||||| ||||| Sbjct 2758939 ---TTCCTCGAAGTCAGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGG 2758883 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 ||| ||||| ||||| ||||| | || || ||| | |||||||| || | ||||| Sbjct 2758882 TATCTTCTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCC 2758823 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 ||| |||| ||| ||| || | || || || || ||||| || ||| ||| || || Sbjct 2758822 AGGCTTGACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGC 2758763 Query 58121 GTGCCTAATGT 58131 || | |||| Sbjct 2758762 ATGTTTGATGT 2758752 >seq7104 Length=1453772 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || ||| |||| || ||||| ||||| | || ||||| || || Sbjct 422164 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 422223 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | |||||| | ||| || |||||||| | || || || || Sbjct 422224 CGATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 422283 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| | || |||||||||||||||||||| || | | | || || ||| |||| Sbjct 422284 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGA-TGGACGCACACTGTCCGACTATA 422342 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || ||||| ||||| ||| | || || Sbjct 422343 ATATTCAGAAGGAATCCACTCTACATTTAGTTCT 422376 >seq3141 Length=2848 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || || || || || || ||||| | || ||||| || || Sbjct 1344 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCG 1403 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | ||| || || | ||| || |||||||| | ||||| || || Sbjct 1404 GATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAA 1463 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| ||||| || || || |||||||| | || || || ||||| Sbjct 1464 CAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAAT 1523 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || | ||| | |||||| | || || || || Sbjct 1524 ATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445726470474720