Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq7084 264 1e-65
seq7155 233 2e-56
seq7104 109 5e-19
seq3141 98.7 9e-16
>seq7084
Length=1258986
Score = 264 bits (292), Expect = 1e-65
Identities = 473/689 (69%), Gaps = 9/689 (1%)
Strand=Plus/Plus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
|| ||||| ||||| ||||| || ||||| || ||||| || || | |||||||||||||
Sbjct 1541 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 1600
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225
||||| ||||| |||||| |||| |||||||| || || | || ||||| | |||
Sbjct 1601 GTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGGC 1660
Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285
||| || | ||||||||||||||||||||||| || || || ||||| || |||
Sbjct 1661 TCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGCC 1720
Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345
|| || ||| | || || || || ||||| || || ||||| || | | || |
Sbjct 1721 ATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 1780
Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405
||||| ||||| || || | ||| ||| | || ||| || |||||| ||
Sbjct 1781 TGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCATA 1840
Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465
||| | ||||||||| | |||| | ||| | || ||| | || || ||||||
Sbjct 1841 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAACTTGA 1900
Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525
|| || || || | || || ||| ||||| || || ||| ||||||| || || |||
Sbjct 1901 AATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGACTCA 1960
Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585
||||| |||| || ||||| || ||||| || ||||| ||||| | ||| | |||||
Sbjct 1961 TTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTG 2020
Query 22586 CTCAAGCC---GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642
| | || |||||| ||||| ||| | | ||| | ||| ||||| |
Sbjct 2021 CGGATACCATGTTGCTTT---ATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 2077
Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702
|| || || |||||||| || || || || | || ||| | || ||||
Sbjct 2078 GGTGT---TTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTA 2134
Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762
|||||||| || | |||||| | | || | |||||| || || ||||| ||||| ||
Sbjct 2135 TACGTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAG 2194
Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAA 22791
|| ||||| ||||| |||| || |||||
Sbjct 2195 TAAATAGTTTCGAATATTTGCTGATTCAA 2223
Score = 221 bits (244), Expect = 1e-52
Identities = 589/890 (66%), Gaps = 24/890 (3%)
Strand=Plus/Plus
Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125
|| || |||||||||||||||| ||| |||||||| || ||||| | ||| || ||
Sbjct 2265 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 2324
Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185
|| |||||||| || | ||| || || | |||||| || ||||| ||||| || |||||
Sbjct 2325 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 2384
Query 23186 TCGATGATCGCTCG-CCACATAGTCTGAGCGTGAACACG-----TCGCACGTACCTGCCT 23239
|| || || ||| ||| | | | || || | | | |||||| |||
Sbjct 2385 TCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGT-----CCT 2438
Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299
|| | || || || | || ||| || || || |||| | || | |||
Sbjct 2439 TCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCG 2498
Query 23300 GGCGA-TTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358
|| | ||| | |||||||| || ||| | || ||| || ||| |||||||
Sbjct 2499 GGACACTTGTGT-GGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAA 2557
Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418
||||| |||||||| | || ||||||| || | ||| || ||| ||||| || ||
Sbjct 2558 TAGATCAGGTATCCACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGT 2617
Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478
||| || |||||||||||||| || || | || |||||||| || |||||||| | |||
Sbjct 2618 GTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGC 2677
Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538
||| ||||| || | ||| || || ||||| || || || || | || ||| ||||
Sbjct 2678 AAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACAC 2737
Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTT 23598
|| | ||| ||||| | ||| || || || | ||||| | | |||||
Sbjct 2738 TCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTT 2797
Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658
||| || | | || |||| | ||| || || || | ||||| || |||| || ||
Sbjct 2798 TGCGCGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACA 2857
Query 23659 TTG--TTTCAGAGTGTCGTAGATGCCCTCGATG---CTGTCCTCTTTGGTCGCGACCAAG 23713
||| | |||| ||| | | || || || ||| |||| | ||||| | |
Sbjct 2858 TTGATGTGCAGA-TGT-GAAAATACCATCAATGGAATCGTCCACCATGGTC---AGTAGA 2912
Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773
|| || || |||| ||||| | || || || | ||| || || || || ||
Sbjct 2913 AAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGT 2972
Query 23774 GTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCG 23833
||||| || | | || | | ||||| || ||||| || ||||| ||||| || ||
Sbjct 2973 GTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCA 3032
Query 23834 TGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTA 23893
|||||||||||||| || ||||| | ||| | || |||| ||| || | ||| ||
Sbjct 3033 TGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTC 3092
Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943
| || | || ||| ||||||| | |||||||| |||||||| | |||
Sbjct 3093 AACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
>seq7155
Length=3116674
Score = 233 bits (258), Expect = 2e-56
Identities = 387/551 (70%), Gaps = 16/551 (3%)
Strand=Plus/Minus
Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648
|||||||||||||||| ||||| || || |||||||| || ||||| ||| || ||||
Sbjct 2759294 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 2759235
Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708
||| |||| || ||| || |||||||| ||||||||| || ||||||||||
Sbjct 2759234 GGGCACGTCTCACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCCG 2759175
Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768
|||| ||||||||||| || || ||| | || ||| | || | || ||||| |||||||
Sbjct 2759174 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGTTTCTGCCAGGAAGTCCAAGTGA 2759115
Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828
| ||||| | ||||| || ||||||||| | || || || || |||||||| |||||||
Sbjct 2759114 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 2759055
Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTA-GAC-TGTTCAA 57886
|| || | || ||||| || | |||||| ||| | ||| | | || | |||||
Sbjct 2759054 ATAGCATATTAATTGATACATATATTAAGGAC-TCGA-AACAAAGGAATTACTTATTCAA 2758997
Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGGAT 57943
|| || || |||||||| || || ||| |||||||| ||| | | |||||
Sbjct 2758996 TGCTATAGAGACAATGCCTGC---CGTAAAGCGCAAGGCAGATTGGGCGCTTGCTTGGAT 2758940
Query 57944 AAAAAGCGCCA---CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000
| | | | |||| || | || | |||| || || || ||||| |||||
Sbjct 2758939 ---TTCCTCGAAGTCAGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGG 2758883
Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060
||| ||||| ||||| ||||| | || || ||| | |||||||| || | |||||
Sbjct 2758882 TATCTTCTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCC 2758823
Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120
||| |||| ||| ||| || | || || || || ||||| || ||| ||| || ||
Sbjct 2758822 AGGCTTGACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGC 2758763
Query 58121 GTGCCTAATGT 58131
|| | ||||
Sbjct 2758762 ATGTTTGATGT 2758752
>seq7104
Length=1453772
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| || ||| |||| || ||||| ||||| | || ||||| || ||
Sbjct 422164 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 422223
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | |||||| | ||| || |||||||| | || || || ||
Sbjct 422224 CGATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 422283
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|| ||| | || |||||||||||||||||||| || | | | || || ||| ||||
Sbjct 422284 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGA-TGGACGCACACTGTCCGACTATA 422342
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || ||||| ||||| ||| | || ||
Sbjct 422343 ATATTCAGAAGGAATCCACTCTACATTTAGTTCT 422376
>seq3141
Length=2848
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||||||||| || || || || || || ||||| | || ||||| || ||
Sbjct 1344 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCG 1403
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | ||| || || | ||| || |||||||| | ||||| || ||
Sbjct 1404 GATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAA 1463
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||||||||| ||||| || || || |||||||| | || || || |||||
Sbjct 1464 CAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAAT 1523
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| ||||| || || | ||| | |||||| | || || || ||
Sbjct 1524 ATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445726470474720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |