Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7155 253 3e-62 seq7084 246 4e-60 >seq7155 Length=3116674 Score = 253 bits (280), Expect = 3e-62 Identities = 393/559 (70%), Gaps = 3/559 (1%) Strand=Plus/Plus Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617 |||| |||||||| ||||||||||||||||| || || || || ||||| |||| | Sbjct 2758736 TGTATTAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAA 2758795 Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 |||| ||| || ||||| || | || ||||||| ||||| || |||||||| || || Sbjct 2758796 ATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATC 2758855 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 ||||| || || |||||||| ||||| || |||||||| ||||| | | || Sbjct 2758856 GAAGCAAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCA 2758915 Query 33738 CCATAACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 ||| | ||| || | | | |||| | |||||||| ||||| ||||| Sbjct 2758916 CCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACG 2758975 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33854 |||||| || ||||| ||||| || | || || ||| || || |||| ||| Sbjct 2758976 GCAGGCATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATAT 2759035 Query 33855 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33914 ||||| || || | ||||||||||| ||||| | || || || || || |||||||| Sbjct 2759036 GTATCAATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCA 2759095 Query 33915 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33974 ||||| || | ||||| || | || ||||| || || ||||| ||| ||||||| Sbjct 2759096 TAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCA 2759155 Query 33975 TTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 34034 ||||| || |||||| || || ||||| || || || ||| ||||||| | ||| Sbjct 2759156 TTCACAATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCA 2759215 Query 34035 TCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 34094 | || || |||||||| ||||||||||| | ||| ||||| || |||||| Sbjct 2759216 TTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTC 2759275 Query 34095 CAAAATGATGCCTCTGCCT 34113 || || ||||| ||||||| Sbjct 2759276 CAGAACGATGCTTCTGCCT 2759294 >seq7084 Length=1258986 Score = 246 bits (272), Expect = 4e-60 Identities = 604/897 (67%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 ||| ||||| | || || || || | |||||||||||| || || || | ||| |||| Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 ||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | | Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCT 63160 | ||||| ||||| ||| | | |||| | || |||||| | ||| | | |||| Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 | || || | ||| ||| || ||||||||| || ||||| || | | || | Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 63277 ||||| | | |||||||| | |||||| ||| ||||| |||| || |||||||| Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 ||| |||||||| ||||| | || ||| || | |||||| | | ||| || || || | Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | || || || || | ||| | || | | |||||||| |||||| ||||| | ||| | Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | || |||||||| | || ||||| | || | || | ||||| Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGC 63513 | |||| |||||| || | | ||| |||||| | | ||| ||||| | || | || Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGC 2793 Query 63514 CTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 || | || || || || ||| || ||||| || || || || ||| || Sbjct 2794 CT---TTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAA 2846 Query 63570 ATTAATGCGCATCG-TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || ||||| ||| | | | | ||| | | || || || ||| ||| || | |||| | Sbjct 2847 ATCAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGT 2905 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 |||||||| || |||| ||| | | |||| | ||| || | || ||||| Sbjct 2906 CAGTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGA 2965 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 ||| || ||||| | ||| ||||| | ||||| || || || |||| || || || Sbjct 2966 AGCATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTC 3025 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 ||| || || | || |||||||||||||| ||||| |||| ||||||||||| Sbjct 3026 TTCGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTT 3085 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | || | || | ||| ||||| ||| | ||||||||||||||||| || || Sbjct 3086 GCCATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 203 bits (224), Expect = 4e-47 Identities = 441/654 (67%), Gaps = 11/654 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| ||| Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || || ||| ||| | || || || | || || || | || ||||| Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||||||||| || || | |||||||||||||| || || || | ||| ||| Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG-AAGGTTT--GTATTCTGAATGGA 62302 |||| |||||| || | |||| | || | | ||| | || || ||| || ||||| Sbjct 1751 CAAACAGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 || | | ||||| |||| || || ||||||| ||| || |||||||| Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869 Query 62363 AACTC-TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | | | ||| || || | || || ||||| ||||| || || | || | || || | Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 |||||||| || |||||||| | |||||||| || |||| ||||||||||||||| | Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 62539 |||| ||||| || || | || ||| || | | ||| ||||| | ||||| || Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 || | | ||||||||||||||| | ||| | ||| |||| Sbjct 2047 CTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAA 2106 Query 62600 AATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 |||||| ||||| || || ||| ||| || ||||| | || | || ||||||| Sbjct 2107 AATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAA 2166 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 || ||||| || || ||||| || || ||||| ||||| || || | || ||| Sbjct 2167 TTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629761184088480