Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 253 3e-62
seq7084 246 4e-60
>seq7155
Length=3116674
Score = 253 bits (280), Expect = 3e-62
Identities = 393/559 (70%), Gaps = 3/559 (1%)
Strand=Plus/Plus
Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617
|||| |||||||| ||||||||||||||||| || || || || ||||| |||| |
Sbjct 2758736 TGTATTAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAA 2758795
Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677
|||| ||| || ||||| || | || ||||||| ||||| || |||||||| || ||
Sbjct 2758796 ATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATC 2758855
Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737
||||| || || |||||||| ||||| || |||||||| ||||| | | ||
Sbjct 2758856 GAAGCAAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCA 2758915
Query 33738 CCATAACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794
||| | ||| || | | | |||| | |||||||| ||||| |||||
Sbjct 2758916 CCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACG 2758975
Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33854
|||||| || ||||| ||||| || | || || ||| || || |||| |||
Sbjct 2758976 GCAGGCATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATAT 2759035
Query 33855 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33914
||||| || || | ||||||||||| ||||| | || || || || || ||||||||
Sbjct 2759036 GTATCAATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCA 2759095
Query 33915 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33974
||||| || | ||||| || | || ||||| || || ||||| ||| |||||||
Sbjct 2759096 TAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCA 2759155
Query 33975 TTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 34034
||||| || |||||| || || ||||| || || || ||| ||||||| | |||
Sbjct 2759156 TTCACAATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCA 2759215
Query 34035 TCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 34094
| || || |||||||| ||||||||||| | ||| ||||| || ||||||
Sbjct 2759216 TTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTC 2759275
Query 34095 CAAAATGATGCCTCTGCCT 34113
|| || ||||| |||||||
Sbjct 2759276 CAGAACGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 246 bits (272), Expect = 4e-60
Identities = 604/897 (67%), Gaps = 28/897 (3%)
Strand=Plus/Plus
Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042
||| ||||| | || || || || | |||||||||||| || || || | ||| ||||
Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319
Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102
||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | |
Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379
Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCT 63160
| ||||| ||||| ||| | | |||| | || |||||| | ||| | | ||||
Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438
Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220
| || || | ||| ||| || ||||||||| || ||||| || | | || |
Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 63277
||||| | | |||||||| | |||||| ||| ||||| |||| || ||||||||
Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554
Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336
||| |||||||| ||||| | || ||| || | |||||| | | ||| || || || |
Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613
Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396
| || || || || | ||| | || | | |||||||| |||||| ||||| | ||| |
Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673
Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456
|||| | | || |||||||| | || ||||| | || | || | |||||
Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733
Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGC 63513
| |||| |||||| || | | ||| |||||| | | ||| ||||| | || | ||
Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGC 2793
Query 63514 CTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569
|| | || || || || ||| || ||||| || || || || ||| ||
Sbjct 2794 CT---TTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAA 2846
Query 63570 ATTAATGCGCATCG-TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628
|| ||||| ||| | | | | ||| | | || || || ||| ||| || | |||| |
Sbjct 2847 ATCAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGT 2905
Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688
|||||||| || |||| ||| | | |||| | ||| || | || |||||
Sbjct 2906 CAGTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGA 2965
Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748
||| || ||||| | ||| ||||| | ||||| || || || |||| || || ||
Sbjct 2966 AGCATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTC 3025
Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
||| || || | || |||||||||||||| ||||| |||| |||||||||||
Sbjct 3026 TTCGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTT 3085
Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865
| || | || | ||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 3086 GCCATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 203 bits (224), Expect = 4e-47
Identities = 441/654 (67%), Gaps = 11/654 (2%)
Strand=Plus/Plus
Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126
|| ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| |||
Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630
Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186
|| ||| || || ||| ||| | || || || | || || || | || |||||
Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690
Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246
||||||||||| || || | |||||||||||||| || || || | ||| |||
Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750
Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG-AAGGTTT--GTATTCTGAATGGA 62302
|||| |||||| || | |||| | || | | ||| | || || ||| || |||||
Sbjct 1751 CAAACAGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809
Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362
|| | | ||||| |||| || || ||||||| ||| || ||||||||
Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869
Query 62363 AACTC-TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421
| | | ||| || || | || || ||||| ||||| || || | || | || || |
Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928
Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481
|||||||| || |||||||| | |||||||| || |||| ||||||||||||||| |
Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988
Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 62539
|||| ||||| || || | || ||| || | | ||| ||||| | ||||| ||
Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046
Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599
|| | | ||||||||||||||| | ||| | ||| ||||
Sbjct 2047 CTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAA 2106
Query 62600 AATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659
|||||| ||||| || || ||| ||| || ||||| | || | || |||||||
Sbjct 2107 AATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAA 2166
Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713
|| ||||| || || ||||| || || ||||| ||||| || || | || |||
Sbjct 2167 TTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629761184088480
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