Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7155 271 7e-68 seq7084 206 2e-48 >seq7155 Length=3116674 Score = 271 bits (300), Expect = 7e-68 Identities = 482/694 (69%), Gaps = 17/694 (2%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| ||||| | ||||||| ||||||||||| || | || ||| Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT--CGAC 11581 ||| | ||| | || || || |||| || || ||||| || ||| ||||| | || Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 11582 GTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCA 11641 ||| || ||| |||| |||| |||||||| ||||| ||||| || || ||| Sbjct 2758714 A--ATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 2758771 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||||| | || || |||| ||||||||||| |||||||| || || ||||| || Sbjct 2758772 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 2758831 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | ||| || || | |||||| ||| ||||| || || || || Sbjct 2758832 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAACG 2758891 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAG-ATATCCATTTTCTG 11818 || |||||||| | ||| | ||| ||| | | || | | || | ||||| Sbjct 2758892 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGC 2758951 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA---ATGC 11875 |||||||| || || |||||| |||||| |||||||| || ||||| || | Sbjct 2758952 GCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTC 2759011 Query 11876 ATTT-TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 ||| |||| | || | | ||||||||| ||||||| ||||||||||| ||||| Sbjct 2759012 CTTTGTTTCGAG----TCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 2759067 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACAT 11993 | ||| ||||| || ||||||||||||||||| || |||||||||| ||| || || | Sbjct 2759068 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTG-TCACTTGGACTT 2759126 Query 11994 CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 || | || | ||| ||| ||| ||||| |||||||||||| | || ||||| | Sbjct 2759127 CCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGG 2759186 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 ||| | ||| ||||| | | ||| | | ||| | |||||||||| | || Sbjct 2759187 CTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATAT 2759246 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 |||| || | ||||||||| || || ||||| || Sbjct 2759247 CTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280 >seq7084 Length=1258986 Score = 206 bits (228), Expect = 2e-48 Identities = 453/673 (67%), Gaps = 7/673 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | ||| || | || ||||||||| || || Sbjct 1544 TCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCCGTC 1603 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||||| ||||| ||| || || || | || | || | | Sbjct 1604 TTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGGCTCA 1663 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | || ||||| ||||| || || ||||| | || || |||||| Sbjct 1664 GCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGCCATT 1723 Query 36970 TCTAAAATACATTTTTGAG-ATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 | ||| | |||| | | ||||||||||| ||||| |||| | ||| | | Sbjct 1724 T-TAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGCTG 1782 Query 37029 TGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 ||||| | || | |||||| || || || | | ||| |||| || || || Sbjct 1783 TGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCATATC 1842 Query 37086 ATTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 || || ||||| | | ||| |||| || | || | ||| |||||||||| |||| Sbjct 1843 ATCATCCCACA-AACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAACTTGAA 1901 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || || | || | | |||||| ||||| ||| || ||||||| ||||||| Sbjct 1902 ATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGACTCAT 1961 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | | ||||||| || || ||||| ||||| || || | || | || | Sbjct 1962 TGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGC 2021 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | |||||| || ||| ||| || | ||| |||||| ||| | ||| ||||| Sbjct 2022 GGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTG 2081 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || |||||| ||||| |||| |||||| ||||| | || ||| | ||||| || | Sbjct 2082 TTTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTATACGTTT 2141 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||| | || || ||| ||||| ||||||||| | ||| | |||| |||| || || | Sbjct 2142 CATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAG 2201 Query 37445 TTTCGAAAATTTG 37457 ||||||| ||||| Sbjct 2202 TTTCGAATATTTG 2214 Score = 196 bits (216), Expect = 5e-45 Identities = 572/874 (65%), Gaps = 8/874 (1%) Strand=Plus/Plus Query 37746 AATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTT 37805 ||| || ||||| | |||||| | ||||||| || | ||| |||||| ||| Sbjct 2273 AATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCG 2332 Query 37806 ATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAAT 37865 |||||||| ||||||||| | || || || || || || | ||| | || ||||| Sbjct 2333 ATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT 2392 Query 37866 AGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTAT 37923 ||| | |||| |||||| | || || | | ||| | ||| ||| Sbjct 2393 GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTG--TTCATAT 2450 Query 37924 TCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCAT 37983 | | |||||| || | || || | |||||||| || ||| || ||||| | | | Sbjct 2451 TTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGT 2510 Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 ||||||||||| ||||| |||||||| |||||| |||| |||||||| |||||||| | Sbjct 2511 GGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATC 2570 Query 38044 CATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT-AA 38102 || || ||| || |||||| ||| | || ||||| || || | | |||||| || Sbjct 2571 CACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACC-AGTGTTTTTCTTCAA 2629 Query 38103 GCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGG 38162 | ||| ||||| |||||||| ||||||||||| | || || | | || || || Sbjct 2630 ATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGG 2689 Query 38163 TCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGG 38222 | |||| | | || |||| | ||| | || | ||||| | | || |||||||| Sbjct 2690 CCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGG 2749 Query 38223 TACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT 38282 || | |||||| ||||||| ||| |||| | || ||| || || || ||||| Sbjct 2750 CACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCA 2809 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG-TTTTAACG 38341 | || || || || || || ||| ||| || || || || ||||| | | | Sbjct 2810 ATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGA 2869 Query 38342 TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTT 38401 | | ||| ||||| || || || ||| || | |||| ||| || |||| || Sbjct 2870 TGTGAAA-ATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATT 2928 Query 38402 GAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCG 38461 | ||| ||| | || || | || ||||| |||||| | || | ||| | Sbjct 2929 GCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGG 2988 Query 38462 ACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATA 38521 | | | || || ||||| ||| | |||| || || |||| || ||||| | | | Sbjct 2989 AAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAA 3048 Query 38522 CCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACG 38581 | | ||||| |||||| ||||||| || | ||||| |||| || || | ||| | Sbjct 3049 CACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATAGG 3108 Query 38582 ATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 | ||| | |||||| | ||||||||| |||| Sbjct 3109 AACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482831891040