Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 286 5e-72
seq7084 242 5e-59
>seq7155
Length=3116674
Score = 286 bits (316), Expect = 5e-72
Identities = 493/712 (69%), Gaps = 7/712 (1%)
Strand=Plus/Plus
Query 35983 AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042
|| ||| | ||| || |||||||| ||||| ||| | || |||||||| || ||
Sbjct 2758585 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 2758644
Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102
| || || || | ||| |||| | ||||| || ||||| || || || | ||
Sbjct 2758645 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 2758704
Query 36103 AATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 36160
|| | | ||| | | | ||| ||| | | |||||||| ||||||||||||
Sbjct 2758705 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762
Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220
||||| || || || || ||||| |||| ||||| ||| |||||||| || | ||
Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822
Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280
||||||| ||||| || |||||||| || || || ||||| ||| ||||| ||
Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATA 2758882
Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATGTA-TC 36337
||||| || || ||||| ||||| | | || ||| | ||| ||| | | | ||
Sbjct 2758883 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATC 2758942
Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397
|| | |||||||| ||||| ||||| ||||||||||||||||||||| ||
Sbjct 2758943 CAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 2759002
Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457
| || || ||| || || |||| |||||||||||| || | |||||||||||
Sbjct 2759003 AAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 2759062
Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517
||||| | || || || || ||||||||||| ||||| || | ||||| || | ||
Sbjct 2759063 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 2759122
Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577
||||| || || ||||| ||| |||||||||||| || || ||| || || |||
Sbjct 2759123 ACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 2759182
Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637
|| || || || ||| ||||||| | ||| || || || ||||||||
Sbjct 2759183 AAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCC 2759242
Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
||||||||||| | ||| ||||| || |||||||| || ||||| |||||||
Sbjct 2759243 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 242 bits (268), Expect = 5e-59
Identities = 603/895 (67%), Gaps = 24/895 (3%)
Strand=Plus/Plus
Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835
||| ||||| | || || || || | |||||||||||| || || || | ||| ||||
Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319
Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895
||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | |
Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379
Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCTT 65953
| ||||| ||||| ||| | | |||| | || |||||| | ||| | | || |
Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438
Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013
| || || | ||| ||| || ||||||||| || ||||| || | | || ||
Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497
Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 66070
||||| | | |||||||| | |||||| ||| ||||| |||| || ||||||||
Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554
Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129
||| |||||||| ||||| | || ||| || |||||||||| | ||| || || || |
Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613
Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189
| || || || || | ||| | || | | ||||||| |||||| ||||| | ||| |
Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673
Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249
|||| | | || |||||||| | || ||||| | || | || | |||||
Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733
Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTT 66308
| |||| |||||| || | | |||||| ||| | | ||| || |||| | | || |
Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TG 2792
Query 66309 CCACTTGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364
|| |||| || || || ||| || ||||| || || || || ||| || ||
Sbjct 2793 CCTTTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAAT 2848
Query 66365 TAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423
||||| ||| | | | | | | | | || || || || ||| |||| |||| | |
Sbjct 2849 CAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCA 2907
Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483
||||||| || |||| ||| | | |||| | ||| || | || |||||||
Sbjct 2908 GTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAG 2967
Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543
| || ||||| | ||| ||||| | ||||| || || || |||| || || ||
Sbjct 2968 CATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTT 3027
Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603
||| || || | || |||||||||||||| ||||| |||| ||||| || |||
Sbjct 3028 CGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 3087
Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658
|| | || | ||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 3088 CATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 205 bits (226), Expect = 1e-47
Identities = 443/656 (68%), Gaps = 15/656 (2%)
Strand=Plus/Plus
Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919
|| ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| |||
Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630
Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979
|| ||| || || ||| ||| | || || || | || || || | || |||||
Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690
Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039
||||||||||| || || | |||||||||||||| || || || | ||| |||
Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750
Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGA 65095
|||| |||||| || | |||| || | | | ||| | || || ||| || |||||
Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809
Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155
|| | | | ||||| |||| || || ||||||| ||| || ||||||||
Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869
Query 65156 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214
| | | ||| || || |||| || ||||||||||| || || | || | || || |
Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928
Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274
|||||||| || |||||||| | |||||||| || |||| ||||||||||||||| |
Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988
Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 65332
|||| ||||| || || | || ||| || | | ||| ||||| | ||||| ||
Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046
Query 65333 TTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 65390
|| | ||| ||||||||||||||| | ||| |||
Sbjct 2047 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 2104
Query 65391 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450
| |||||| ||||| || || ||| ||| || || || | || | || ||||||
Sbjct 2105 AAAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCT 2164
Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506
| ||| ||||| || || ||||| || || ||||| |||||||| || | || |||
Sbjct 2165 AATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658113844171440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |