Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7155 286 5e-72 seq7084 242 5e-59 >seq7155 Length=3116674 Score = 286 bits (316), Expect = 5e-72 Identities = 493/712 (69%), Gaps = 7/712 (1%) Strand=Plus/Plus Query 35983 AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042 || ||| | ||| || |||||||| ||||| ||| | || |||||||| || || Sbjct 2758585 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 2758644 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 | || || || | ||| |||| | ||||| || ||||| || || || | || Sbjct 2758645 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 2758704 Query 36103 AATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 36160 || | | ||| | | | ||| ||| | | |||||||| |||||||||||| Sbjct 2758705 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 ||||| || || || || ||||| |||| ||||| ||| |||||||| || | || Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||||| ||||| || |||||||| || || || ||||| ||| ||||| || Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATA 2758882 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATGTA-TC 36337 ||||| || || ||||| ||||| | | || ||| | ||| ||| | | | || Sbjct 2758883 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATC 2758942 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | |||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 2758943 CAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 2759002 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | || || ||| || || |||| |||||||||||| || | ||||||||||| Sbjct 2759003 AAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 2759062 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 ||||| | || || || || ||||||||||| ||||| || | ||||| || | || Sbjct 2759063 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 2759122 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 ||||| || || ||||| ||| |||||||||||| || || ||| || || ||| Sbjct 2759123 ACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 2759182 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 || || || || ||| ||||||| | ||| || || || |||||||| Sbjct 2759183 AAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCC 2759242 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 ||||||||||| | ||| ||||| || |||||||| || ||||| ||||||| Sbjct 2759243 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294 >seq7084 Length=1258986 Score = 242 bits (268), Expect = 5e-59 Identities = 603/895 (67%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 ||| ||||| | || || || || | |||||||||||| || || || | ||| |||| Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 ||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | | Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCTT 65953 | ||||| ||||| ||| | | |||| | || |||||| | ||| | | || | Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 | || || | ||| ||| || ||||||||| || ||||| || | | || || Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 66070 ||||| | | |||||||| | |||||| ||| ||||| |||| || |||||||| Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 ||| |||||||| ||||| | || ||| || |||||||||| | ||| || || || | Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | || || || || | ||| | || | | ||||||| |||||| ||||| | ||| | Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 |||| | | || |||||||| | || ||||| | || | || | ||||| Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTT 66308 | |||| |||||| || | | |||||| ||| | | ||| || |||| | | || | Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TG 2792 Query 66309 CCACTTGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 || |||| || || || ||| || ||||| || || || || ||| || || Sbjct 2793 CCTTTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAAT 2848 Query 66365 TAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423 ||||| ||| | | | | | | | | || || || || ||| |||| |||| | | Sbjct 2849 CAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCA 2907 Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 ||||||| || |||| ||| | | |||| | ||| || | || ||||||| Sbjct 2908 GTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAG 2967 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 | || ||||| | ||| ||||| | ||||| || || || |||| || || || Sbjct 2968 CATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTT 3027 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 ||| || || | || |||||||||||||| ||||| |||| ||||| || ||| Sbjct 3028 CGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 3087 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 || | || | ||| ||||| ||| | ||||||||||||||||| || || Sbjct 3088 CATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 205 bits (226), Expect = 1e-47 Identities = 443/656 (68%), Gaps = 15/656 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| ||| Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| || || ||| ||| | || || || | || || || | || ||||| Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||||||||| || || | |||||||||||||| || || || | ||| ||| Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGA 65095 |||| |||||| || | |||| || | | | ||| | || || ||| || ||||| Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 || | | | ||||| |||| || || ||||||| ||| || |||||||| Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869 Query 65156 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | | | ||| || || |||| || ||||||||||| || || | || | || || | Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 |||||||| || |||||||| | |||||||| || |||| ||||||||||||||| | Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 65332 |||| ||||| || || | || ||| || | | ||| ||||| | ||||| || Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046 Query 65333 TTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 65390 || | ||| ||||||||||||||| | ||| ||| Sbjct 2047 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 2104 Query 65391 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 | |||||| ||||| || || ||| ||| || || || | || | || |||||| Sbjct 2105 AAAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCT 2164 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 | ||| ||||| || || ||||| || || ||||| |||||||| || | || ||| Sbjct 2165 AATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658113844171440