Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 280 2e-70
seq7084 259 7e-64
>seq7155
Length=3116674
Score = 280 bits (310), Expect = 2e-70
Identities = 493/712 (69%), Gaps = 7/712 (1%)
Strand=Plus/Plus
Query 49785 AATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 49844
|| ||| | ||| || |||||||| ||||| ||| | || |||||||| || ||
Sbjct 2758585 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 2758644
Query 49845 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904
| || || || | ||| |||| | ||||| || ||||| || || || | ||
Sbjct 2758645 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 2758704
Query 49905 AATAG-ATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 49962
|| | | | ||| | | | ||| ||| || | |||||||| ||||||||||||
Sbjct 2758705 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
||||| || || || || ||||| |||| ||||||||| |||||||| || | ||
Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||||| ||||| || |||||||| || || || ||||| ||| ||||||||
Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATA 2758882
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTCATGTA-TC 50139
||||| || || ||||| |||| | | || ||| | |||| || | | | ||
Sbjct 2758883 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATC 2758942
Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199
|| | |||||||| ||||| ||||| |||||| || ||||| ||||| ||
Sbjct 2758943 CAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 2759002
Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259
| || || ||| || || |||| ||| ||||| || || | |||||||||||
Sbjct 2759003 AAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 2759062
Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319
||||| | || || || || || |||||||| ||||| || | ||||| || | ||
Sbjct 2759063 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 2759122
Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379
||||| || || |||||| ||| |||||||||||| || || ||| || || |||
Sbjct 2759123 ACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 2759182
Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439
|| || || || ||| ||||||||| ||| || || || ||||||||
Sbjct 2759183 AAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCC 2759242
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
||||||||||| | ||||||||| || |||||||| || ||||| |||||||
Sbjct 2759243 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 259 bits (286), Expect = 7e-64
Identities = 603/892 (68%), Gaps = 18/892 (2%)
Strand=Plus/Plus
Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714
||| ||||| | ||||| || || | |||||||||||||| || || | ||| ||||
Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319
Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774
||||||||||| ||||| ||||| ||||| | ||| | || || || || || | |
Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379
Query 79775 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATC-TCTT 79832
| ||||| ||||| ||| | | |||| | || |||||| | ||| | || |
Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438
Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892
| || || | |||| |||||| ||||||||| || ||||| || || | ||| ||
Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497
Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952
||||| | || |||||||| | |||||| ||| |||| | | ||| |||||||||||
Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAA 2557
Query 79953 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011
|||||||| ||||| | || ||| || | |||||||| | |||||| || || || |
Sbjct 2558 TAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAG 2616
Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071
| || || || | ||| | || | | |||||||| |||||| ||||| | ||| ||||
Sbjct 2617 TGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGG 2676
Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131
| | | || || ||||| | || ||||| | || | || | ||||| | |
Sbjct 2677 CAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACA 2736
Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCA 80190
||| |||||| || | | |||||| ||| | | ||| || |||| | | || | ||
Sbjct 2737 CTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TGCCT 2795
Query 80191 CTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246
| || || || || ||| || ||||| || || || || ||| || || ||
Sbjct 2796 TTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAATCAA 2851
Query 80247 TGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305
||| ||| | | | | | | | | || || || ||| ||| || | |||| | ||||
Sbjct 2852 TGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTA 2910
Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365
|||| || |||| ||| | | |||| | ||| || | || |||||||| |
Sbjct 2911 GAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCAT 2970
Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425
| ||||| | ||| || || | ||||| || || || |||| || || ||
Sbjct 2971 GTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGC 3030
Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485
||| || || | || |||||||||||||| ||||| |||| ||||| || ||| ||
Sbjct 3031 CATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCAT 3090
Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537
| | || | ||| || || ||| | ||||||||||||||||| || ||
Sbjct 3091 TCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 251 bits (278), Expect = 1e-61
Identities = 454/655 (69%), Gaps = 13/655 (2%)
Strand=Plus/Plus
Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798
|| ||||||||||| | ||| ||||| ||||| || ||||| |||| |||||||||
Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630
Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858
|| ||| || || ||| ||| | || || || | || || || | || |||||
Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690
Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918
||||||||||| || || | |||||||||||||| || || || | ||| |||
Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750
Query 78919 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGA 78974
|||| |||||| || | |||| || | | | ||| | || || ||| || |||||
Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809
Query 78975 TCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 79034
|| | | | ||||| |||| || || || |||| ||| || ||||||||
Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869
Query 79035 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093
| | | ||| || || |||| || ||||||||||| || || | || | || || |
Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928
Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153
|||||||| || || ||||| | || ||||| || |||| ||||||||||||||| |
Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988
Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTT 79213
| |||||||| || || | || ||| || | | ||| | | | ||||| || |
Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTCCT 2048
Query 79214 TTAGAGATTC---CCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270
| | |||| ||||| ||||||||||| || || ||| | ||||| ||||
Sbjct 2049 TCA---ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTA 2105
Query 79271 GAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTA 79330
|||||| |||||| || ||| ||| | || |||||||| | || | ||||| ||||
Sbjct 2106 AAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTA 2165
Query 79331 ATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385
|||| ||||| || || ||||| || || ||||| |||||||| || | || |||
Sbjct 2166 ATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718204461072240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |