Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 259 5e-64
>seq7155
Length=3116674
Score = 259 bits (286), Expect = 5e-64
Identities = 484/703 (69%), Gaps = 16/703 (2%)
Strand=Plus/Plus
Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757
|| || | |||||| | ||| || ||||| | ||||||| | ||||||||||| |||
Sbjct 2758586 AGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATT 2758645
Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817
| || || || | | ||||| ||||| | || || ||||| || |
Sbjct 2758646 AAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGA---A 2758702
Query 13818 ATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874
|| ||| || ||| ||||||| || | | ||| ||||| || || |||||
Sbjct 2758703 ATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762
Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934
|| || ||||||||||| |||||||||| ||| ||||| || |||||||| || |||
Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822
Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATA 13992
||||| || || ||||| || | ||| || || | |||||| || | | ||| ||| |
Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAA--GAAGA 2758880
Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052
| || ||||| |||||||| || |||| ||||| ||||| ||| || || |
Sbjct 2758881 TACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAA 2758940
Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112
|||| ||||| || | || || | | |||||| || |||||||| |
Sbjct 2758941 TCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGA 2759000
Query 14113 ATAAATA-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169
|||| || |||||| | ||| ||| ||| ||| ||||||||||| | || ||||||||
Sbjct 2759001 ATAAGTAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATGCTATACA 2759057
Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229
||||||| || | || ||||| || || ||||| ||||| ||||| | || || | |
Sbjct 2759058 TTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCA 2759117
Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289
||| |||||| | | || | ||| | | ||||||||| || ||||||||| || |
Sbjct 2759118 CTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGG 2759177
Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349
| ||||| || || | || | |||||| | | | || | || |||| | |||||
Sbjct 2759178 CGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAAT 2759237
Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| | ||| ||||||||||||||||| || |||||||| ||
Sbjct 2759238 CATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479685028364400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |