Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7155 242 4e-59 >seq7155 Length=3116674 Score = 242 bits (268), Expect = 4e-59 Identities = 473/693 (68%), Gaps = 12/693 (2%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || ||||| | ||||||| | ||||||||||| |||| || || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | | |||||| ||||| | || || ||||| || ||| || | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGA---AATTATTTC 2758710 Query 13614 AATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || ||| |||||| || | | ||| ||||| || || ||||| || || || Sbjct 2758711 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 2758770 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||||||||| |||||||||| ||| ||||| || |||||||| || |||||||| || Sbjct 2758771 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 2758830 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || ||||| || | ||| || || | ||| || || ||||| || || ||||| Sbjct 2758831 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAAC 2758890 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || |||| ||||| ||||| ||| || || ||||| Sbjct 2758891 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAG 2758950 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG-TT 13909 ||||| || | || || | | |||||| || || ||||||||||| | || Sbjct 2758951 CGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATT 2759010 Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | ||| ||| ||| ||| ||||||||||| | || ||||||||||||||| || Sbjct 2759011 CCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATGCTATACATTTCAGAATG 2759067 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || || || ||||| ||||| || || | || |||| | ||| || || Sbjct 2759068 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 2759127 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | | | || | ||| | | |||||||| |||||||||||| || || ||||| || Sbjct 2759128 CTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 2759187 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATC 14147 || | || | |||||| | | | || | || |||| | |||||| | | ||| Sbjct 2759188 TAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATC 2759247 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||||||||||||||||| || |||||||| || Sbjct 2759248 TTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478545930408240