Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 242 4e-59
>seq7155
Length=3116674
Score = 242 bits (268), Expect = 4e-59
Identities = 473/693 (68%), Gaps = 12/693 (2%)
Strand=Plus/Plus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
|||||| | ||| || ||||| | ||||||| | ||||||||||| |||| || ||
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613
|| | | |||||| ||||| | || || ||||| || ||| || |
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGA---AATTATTTC 2758710
Query 13614 AATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670
|| ||| |||||| || | | ||| ||||| || || ||||| || || ||
Sbjct 2758711 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 2758770
Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730
||||||||| |||||||||| ||| ||||| || |||||||| || |||||||| ||
Sbjct 2758771 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 2758830
Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790
|| ||||| || | ||| || || | ||| || || ||||| || || |||||
Sbjct 2758831 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAAC 2758890
Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850
|||||||| || |||| ||||| ||||| ||| || || |||||
Sbjct 2758891 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAG 2758950
Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG-TT 13909
||||| || | || || | | |||||| || || ||||||||||| | ||
Sbjct 2758951 CGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATT 2759010
Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967
|||| | ||| ||| ||| ||| ||||||||||| | || ||||||||||||||| ||
Sbjct 2759011 CCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATGCTATACATTTCAGAATG 2759067
Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027
| || || || || || ||||| ||||| || || | || |||| | ||| || ||
Sbjct 2759068 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 2759127
Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087
| | | || | ||| | | |||||||| |||||||||||| || || ||||| ||
Sbjct 2759128 CTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 2759187
Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATC 14147
|| | || | |||||| | | | || | || |||| | |||||| | | |||
Sbjct 2759188 TAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATC 2759247
Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
||||||||||||||||| || |||||||| ||
Sbjct 2759248 TTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478545930408240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |