Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 275 8e-69
seq7084 262 5e-65
>seq7155
Length=3116674
Score = 275 bits (304), Expect = 8e-69
Identities = 397/556 (71%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105
|||||||| ||||||||||||||||| || || || || |||||||||| |||||
Sbjct 2758741 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 2758800
Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165
||| |||||||| || | || ||||||| ||||| || |||||||| || || || ||
Sbjct 2758801 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 2758860
Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225
||| ||| |||||||| ||||| || || ||||| ||||| | | || ||| |
Sbjct 2758861 AAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 2758920
Query 42226 ACCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282
||| ||| | | | |||| | |||||||| ||||| ||||| |||
Sbjct 2758921 GTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGG 2758980
Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342
||| || ||||| ||||| || | || || ||| || || |||| |||||||||
Sbjct 2758981 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 2759040
Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402
|| || | ||||||||||| ||||| | || || || || || |||||||| |||||
Sbjct 2759041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 2759100
Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462
|| | ||||| || || || ||||| || || |||||| ||| |||||| |||||
Sbjct 2759101 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCAC 2759160
Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CC 42520
|| || ||| || || ||||| || || || ||| ||||||| | ||| | |
Sbjct 2759161 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 2759220
Query 42521 GGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAA 42580
||| | | |||||||| ||||||||||| | ||||||||| ||||| |||||
Sbjct 2759221 AGTGAGACGT--GCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAG 2759278
Query 42581 AATGATGCTTCTGCCT 42596
|| |||||||||||||
Sbjct 2759279 AACGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 262 bits (290), Expect = 5e-65
Identities = 600/886 (68%), Gaps = 14/886 (2%)
Strand=Plus/Plus
Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801
||||| | |||||| || || | |||||||||||| || || || | ||| ||||||||
Sbjct 2264 ATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATT 2323
Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861
||||||| ||||| ||||| ||||| | || | || || || || || | || ||
Sbjct 2324 ACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGA 2383
Query 71862 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATC-TCTTTTCT 71919
||| ||||| ||| | | |||| | || |||||| | || ||| | || || ||
Sbjct 2384 TTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCT 2442
Query 71920 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGA 71979
|| | |||| |||||| ||||||||| || ||||| | | | ||| || |||
Sbjct 2443 GTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGA 2501
Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039
|| | | |||||||| | ||||| ||| |||| | | ||| ||||||||||| |||
Sbjct 2502 CACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGA 2561
Query 72040 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098
||||| ||||| | || ||| || | |||||||| | |||||| || || || || ||
Sbjct 2562 TCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTT 2620
Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158
|| || | ||| | || | | |||||||| |||||| ||||| | ||| ||||| |
Sbjct 2621 TTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAA 2680
Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218
| || |||||||| | || ||||| | || | || | ||||| | ||||
Sbjct 2681 GGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCG 2740
Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGG 72277
|||||| || | | |||||| ||| | ||| || |||| | | || | || | |
Sbjct 2741 CAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TGCCTTTTG 2799
Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335
| || || | || || | ||||| || || || || ||| || || ||||| ||
Sbjct 2800 CGCGTATGCAATG-TACGT-TCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACA 2857
Query 72336 TCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394
| | | | | | | | | || || || || ||| |||| |||| | |||||||| |
Sbjct 2858 TTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGC 2916
Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454
| |||| ||| | | |||| | ||| || | || |||||||| || ||||
Sbjct 2917 ATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAA 2976
Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514
| | ||| || || | ||||| || || || |||| || || || |||||
Sbjct 2977 AATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTA 3036
Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574
| || | || |||||||||||||||||||| |||| ||||| || ||| ||| | |
Sbjct 3037 TACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACT 3096
Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620
| | ||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 3097 TTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 235 bits (260), Expect = 7e-57
Identities = 443/650 (68%), Gaps = 13/650 (2%)
Strand=Plus/Plus
Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886
||||||||| | ||| |||||||| || || ||||| |||| ||||| ||||| ||
Sbjct 1576 TTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTAT 1635
Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946
| || || ||| |||| | || || || | ||| || || | ||||||||| |||||
Sbjct 1636 AGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATC 1695
Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006
|||||| || || | |||||||||||||| || || || | ||| |||||||
Sbjct 1696 GATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCCCAAAC 1755
Query 71007 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCAC 71062
|||||| || | |||| || | | | ||| | || || ||| || ||||| || |
Sbjct 1756 AGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGAGCCGC 1814
Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122
| | ||||| ||||||| || || |||| ||| || |||||||| | | |
Sbjct 1815 GACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAGATCGC 1874
Query 71123 -TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 71181
||| || ||| |||| || ||||||||||| || || | || | ||| || ||||||
Sbjct 1875 GTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATA 1933
Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241
||| || |||||||| | ||||||||| || |||| ||||||||||||||| |||||
Sbjct 1934 TTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTT 1993
Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGA 71301
||||| || || | || | | || | | ||||||| ||||| || || |
Sbjct 1994 GGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTCCTTCA-- 2051
Query 71302 GATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358
|||| ||||||||||||||| | |||| ||
Sbjct 2052 -ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAAAATA 2110
Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418
|| |||||| || ||| ||| ||| || || || | || | |||||| |||| |||
Sbjct 2111 CCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAATTCG 2170
Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468
||||| || || ||||| ||||| ||||| |||||||| || | || |||
Sbjct 2171 CAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671079082706160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |