Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7155 275 8e-69 seq7084 262 5e-65 >seq7155 Length=3116674 Score = 275 bits (304), Expect = 8e-69 Identities = 397/556 (71%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||||| ||||||||||||||||| || || || || |||||||||| ||||| Sbjct 2758741 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 2758800 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 2758801 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 2758860 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| ||| |||||||| ||||| || || ||||| ||||| | | || ||| | Sbjct 2758861 AAAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 2758920 Query 42226 ACCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| ||| | | | |||| | |||||||| ||||| ||||| ||| Sbjct 2758921 GTTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGG 2758980 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||| || ||||| ||||| || | || || ||| || || |||| ||||||||| Sbjct 2758981 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 2759040 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || | ||||||||||| ||||| | || || || || || |||||||| ||||| Sbjct 2759041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 2759100 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 || | ||||| || || || ||||| || || |||||| ||| |||||| ||||| Sbjct 2759101 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCAC 2759160 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CC 42520 || || ||| || || ||||| || || || ||| ||||||| | ||| | | Sbjct 2759161 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 2759220 Query 42521 GGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAA 42580 ||| | | |||||||| ||||||||||| | ||||||||| ||||| ||||| Sbjct 2759221 AGTGAGACGT--GCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAG 2759278 Query 42581 AATGATGCTTCTGCCT 42596 || ||||||||||||| Sbjct 2759279 AACGATGCTTCTGCCT 2759294 >seq7084 Length=1258986 Score = 262 bits (290), Expect = 5e-65 Identities = 600/886 (68%), Gaps = 14/886 (2%) Strand=Plus/Plus Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| | |||||| || || | |||||||||||| || || || | ||| |||||||| Sbjct 2264 ATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATT 2323 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 ||||||| ||||| ||||| ||||| | || | || || || || || | || || Sbjct 2324 ACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGA 2383 Query 71862 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATC-TCTTTTCT 71919 ||| ||||| ||| | | |||| | || |||||| | || ||| | || || || Sbjct 2384 TTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCT 2442 Query 71920 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGA 71979 || | |||| |||||| ||||||||| || ||||| | | | ||| || ||| Sbjct 2443 GTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGA 2501 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 || | | |||||||| | ||||| ||| |||| | | ||| ||||||||||| ||| Sbjct 2502 CACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGA 2561 Query 72040 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098 ||||| ||||| | || ||| || | |||||||| | |||||| || || || || || Sbjct 2562 TCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTT 2620 Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 || || | ||| | || | | |||||||| |||||| ||||| | ||| ||||| | Sbjct 2621 TTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAA 2680 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 | || |||||||| | || ||||| | || | || | ||||| | |||| Sbjct 2681 GGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCG 2740 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGG 72277 |||||| || | | |||||| ||| | ||| || |||| | | || | || | | Sbjct 2741 CAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-TGCCTTTTG 2799 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | || || | || || | ||||| || || || || ||| || || ||||| || Sbjct 2800 CGCGTATGCAATG-TACGT-TCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACA 2857 Query 72336 TCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 | | | | | | | | | || || || || ||| |||| |||| | |||||||| | Sbjct 2858 TTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGC 2916 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | |||| ||| | | |||| | ||| || | || |||||||| || |||| Sbjct 2917 ATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAA 2976 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | | ||| || || | ||||| || || || |||| || || || ||||| Sbjct 2977 AATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTA 3036 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | || |||||||||||||||||||| |||| ||||| || ||| ||| | | Sbjct 3037 TACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACT 3096 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 | | ||| ||||| ||| | ||||||||||||||||| || || Sbjct 3097 TTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 235 bits (260), Expect = 7e-57 Identities = 443/650 (68%), Gaps = 13/650 (2%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||||||||| | ||| |||||||| || || ||||| |||| ||||| ||||| || Sbjct 1576 TTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTAT 1635 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 | || || ||| |||| | || || || | ||| || || | ||||||||| ||||| Sbjct 1636 AGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATC 1695 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 |||||| || || | |||||||||||||| || || || | ||| ||||||| Sbjct 1696 GATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCCCAAAC 1755 Query 71007 AGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCAC 71062 |||||| || | |||| || | | | ||| | || || ||| || ||||| || | Sbjct 1756 AGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGAGCCGC 1814 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122 | | ||||| ||||||| || || |||| ||| || |||||||| | | | Sbjct 1815 GACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAGATCGC 1874 Query 71123 -TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 71181 ||| || ||| |||| || ||||||||||| || || | || | ||| || |||||| Sbjct 1875 GTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATA 1933 Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241 ||| || |||||||| | ||||||||| || |||| ||||||||||||||| ||||| Sbjct 1934 TTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTT 1993 Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGA 71301 ||||| || || | || | | || | | ||||||| ||||| || || | Sbjct 1994 GGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTCCTTCA-- 2051 Query 71302 GATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 |||| ||||||||||||||| | |||| || Sbjct 2052 -ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAAAATA 2110 Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || |||||| || ||| ||| ||| || || || | || | |||||| |||| ||| Sbjct 2111 CCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAATTCG 2170 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468 ||||| || || ||||| ||||| ||||| |||||||| || | || ||| Sbjct 2171 CAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671079082706160