Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7018 140 5e-28 seq7133 138 2e-27 seq7084 114 2e-20 >seq7018 Length=681239 Score = 140 bits (154), Expect = 5e-28 Identities = 438/675 (65%), Gaps = 14/675 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||| || || ||||| || || || || || | | || ||||| ||||||||| || Sbjct 280519 TTGCGATAGAAAATGACACCAGCACGTGGTCCACGCAATGTTTTGTGTGTTGTAGTGCTC 280460 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | || ||||||||| || || || | | || | || || ||||| Sbjct 280459 ACCACATCGGCATACTCAAATGGTGAGGGTATTAAACCAGCTGCCACTAAACCGGCAATA 280400 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| |||||||| | || | || | | || || | ||||| || | Sbjct 280399 TGTGCCATATCGGCAAAAAGATATGAATCATTTTGGTCACAGATTTTACGGAAGCGGGCA 280340 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | || || | || ||| |||||||| || | | |||| |||| || Sbjct 280339 TAGTCAAGGCAACGTGAGTAACAAGAAACACCGGCTATAATAACGCGAGGTCTGAAGAGT 280280 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || ||| || | | | || | || |||| || || || | |||||||| || Sbjct 280279 TTAGCATTCGCTTCCAATTGATCGTAATCGATAAGACCCGTACTTGCGTCCACCTTATAT 280220 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTT-----GCGG-----AATCCG 127449 ||||| || |||||| | | ||||| || || | |||| || | || ||| Sbjct 280219 GGCATACTCTCGAAATATATCGATGTTGCTGAAATACGTTTATTAGCAGTCATGAAACCG 280160 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || | || || || || |||| ||| || ||||| || | | |||| |||| | | Sbjct 280159 TGTGTTAAATGACCGCCATCCGGCAAATCAAGACCCATTATACGATCGTGGGGTTGACAG 280100 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | ||||||| ||||||||||| || ||| ||||| || || |||||| || ||| Sbjct 280099 AGGGCAGTGTATACGGCAAAGTTAGCTGGCGAACCCGAATAAGGCTGTACATTTACGCCC 280040 Query 127570 CATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 ||||| || | || | | || ||| || || | ||||| || |||| || Sbjct 280039 CATTC-CTCTGGATTGAGACGAAATGCTTCAAGTGCACGTTTTTGTGCAAGTCGTTCTAT 279981 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTT 127688 ||| ||||| || || ||||||||||| |||||||| ||| | || || |||||||| Sbjct 279980 TTCATCAATAAATTCATTTCCACCATAGTACCGCTTTCCAGGCATGCCTTCGGAGTACTT 279921 Query 127689 GTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCGATGC 127748 ||| || || ||||| | |||||| || | || | ||||| || || || Sbjct 279920 ATTGTGCAGGCAAGAACTTAAGCATTCCAAAACAGATACGGATGTAAAATTCTCACTGGC 279861 Query 127749 GATCAACTCTAAGCC 127763 |||| |||||||| Sbjct 279860 AATCATTTCTAAGCC 279846 >seq7133 Length=2056560 Score = 138 bits (152), Expect = 2e-27 Identities = 296/438 (68%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 ||| || |||| || | || || ||||| || ||||| || || || |||||| | || Sbjct 1568807 CGGATTTTCCGATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCA 1568866 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 | || ||||||| | ||||| | ||||| || | | ||||| | |||||| Sbjct 1568867 TTTTGGGGCCAAGTACAGAAACTGCAAAGACAGT-TACAAAGATGAGGGTATAGATCAAC 1568925 Query 70164 TGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCT 70223 | ||| | | |||||||| ||| | ||||||| ||| | | || |||||| Sbjct 1568926 TTCAGCAAGTAATTGACACAATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTG 1568985 Query 70224 CATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGT 70283 | |||||||||| ||| | | |||||||| |||||||| ||||| ||| | || || | Sbjct 1568986 CTTGGAATCCTGTCGATATCCCTCAAATGGCTCTACCACCTTGTCATTGTCTTGCACAAT 1569045 Query 70284 TTTACTCGTA--CGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGG 70341 ||| | || | |||| | || || || | | || || | |||||||| ||||| Sbjct 1569046 TTT--TTGTTGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGG 1569103 Query 70342 CCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACAT 70401 | |||||||| ||||| ||||| || || || | || | ||||||||||| || Sbjct 1569104 ATTGGGTGTACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATAT 1569163 Query 70402 TACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAA 70461 ||| | || | | || ||||| ||||| | ||||| || || || ||| || Sbjct 1569164 TACTGATCTCCGACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAA 1569223 Query 70462 TCACATCGAGCCATTAAA 70479 ||| || || ||||||| Sbjct 1569224 TCATATTGAAGCATTAAA 1569241 >seq7084 Length=1258986 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 ||||| ||||| ||||||||| | || || ||| | |||||||| || | ||| Sbjct 1764 TACAAAACTGTTTGGGAGATTTCCGTGAAAACCTCGATTAAAATGGCTGCAGATCGCGGT 1705 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | ||| || |||||||| |||||||| | |||| || ||||||| ||| | Sbjct 1704 GCATTCATCGATCAGAGTCAGTCGTTCAACATACACGTGGCTGAGCCCAACTATGGCAAG 1645 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | ||||| ||||| || |||| ||||| || ||||||||||||||||| ||| || Sbjct 1644 CTTACTTCTATACATTTCTACGGCTGGAAGGCAGGTCTCAAGACGGGCATGTATTATTTG 1585 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | || || | || | ||||| |||| |||||| ||||| Sbjct 1584 CGTACGAAACCAGCTGCAAATGCTATACAATTTACTGTGGA 1544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740992819622160