Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7018 140 5e-28
seq7133 138 2e-27
seq7084 114 2e-20
>seq7018
Length=681239
Score = 140 bits (154), Expect = 5e-28
Identities = 438/675 (65%), Gaps = 14/675 (2%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
||||| || || ||||| || || || || || | | || ||||| ||||||||| ||
Sbjct 280519 TTGCGATAGAAAATGACACCAGCACGTGGTCCACGCAATGTTTTGTGTGTTGTAGTGCTC 280460
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|| | || ||||||||| || || || | | || | || || |||||
Sbjct 280459 ACCACATCGGCATACTCAAATGGTGAGGGTATTAAACCAGCTGCCACTAAACCGGCAATA 280400
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
||||| |||||||| | || | || | | || || | ||||| || |
Sbjct 280399 TGTGCCATATCGGCAAAAAGATATGAATCATTTTGGTCACAGATTTTACGGAAGCGGGCA 280340
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||| | || || | || ||| |||||||| || | | |||| |||| ||
Sbjct 280339 TAGTCAAGGCAACGTGAGTAACAAGAAACACCGGCTATAATAACGCGAGGTCTGAAGAGT 280280
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
|| ||| || | | | || | || |||| || || || | |||||||| ||
Sbjct 280279 TTAGCATTCGCTTCCAATTGATCGTAATCGATAAGACCCGTACTTGCGTCCACCTTATAT 280220
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTT-----GCGG-----AATCCG 127449
||||| || |||||| | | ||||| || || | |||| || | || |||
Sbjct 280219 GGCATACTCTCGAAATATATCGATGTTGCTGAAATACGTTTATTAGCAGTCATGAAACCG 280160
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|| || | || || || || |||| ||| || ||||| || | | |||| |||| | |
Sbjct 280159 TGTGTTAAATGACCGCCATCCGGCAAATCAAGACCCATTATACGATCGTGGGGTTGACAG 280100
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| ||||||| ||||||||||| || ||| ||||| || || |||||| || |||
Sbjct 280099 AGGGCAGTGTATACGGCAAAGTTAGCTGGCGAACCCGAATAAGGCTGTACATTTACGCCC 280040
Query 127570 CATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
||||| || | || | | || ||| || || | ||||| || |||| ||
Sbjct 280039 CATTC-CTCTGGATTGAGACGAAATGCTTCAAGTGCACGTTTTTGTGCAAGTCGTTCTAT 279981
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTT 127688
||| ||||| || || ||||||||||| |||||||| ||| | || || ||||||||
Sbjct 279980 TTCATCAATAAATTCATTTCCACCATAGTACCGCTTTCCAGGCATGCCTTCGGAGTACTT 279921
Query 127689 GTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCGATGC 127748
||| || || ||||| | |||||| || | || | ||||| || || ||
Sbjct 279920 ATTGTGCAGGCAAGAACTTAAGCATTCCAAAACAGATACGGATGTAAAATTCTCACTGGC 279861
Query 127749 GATCAACTCTAAGCC 127763
|||| ||||||||
Sbjct 279860 AATCATTTCTAAGCC 279846
>seq7133
Length=2056560
Score = 138 bits (152), Expect = 2e-27
Identities = 296/438 (68%), Gaps = 6/438 (1%)
Strand=Plus/Plus
Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104
||| || |||| || | || || ||||| || ||||| || || || |||||| | ||
Sbjct 1568807 CGGATTTTCCGATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCA 1568866
Query 70105 CTCGGGCACCAAGTATGTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163
| || ||||||| | ||||| | ||||| || | | ||||| | ||||||
Sbjct 1568867 TTTTGGGGCCAAGTACAGAAACTGCAAAGACAGT-TACAAAGATGAGGGTATAGATCAAC 1568925
Query 70164 TGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCT 70223
| ||| | | |||||||| ||| | ||||||| ||| | | || ||||||
Sbjct 1568926 TTCAGCAAGTAATTGACACAATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTG 1568985
Query 70224 CATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGT 70283
| |||||||||| ||| | | |||||||| |||||||| ||||| ||| | || || |
Sbjct 1568986 CTTGGAATCCTGTCGATATCCCTCAAATGGCTCTACCACCTTGTCATTGTCTTGCACAAT 1569045
Query 70284 TTTACTCGTA--CGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGG 70341
||| | || | |||| | || || || | | || || | |||||||| |||||
Sbjct 1569046 TTT--TTGTTGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGG 1569103
Query 70342 CCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACAT 70401
| |||||||| ||||| ||||| || || || | || | ||||||||||| ||
Sbjct 1569104 ATTGGGTGTACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATAT 1569163
Query 70402 TACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAA 70461
||| | || | | || ||||| ||||| | ||||| || || || ||| ||
Sbjct 1569164 TACTGATCTCCGACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAA 1569223
Query 70462 TCACATCGAGCCATTAAA 70479
||| || || |||||||
Sbjct 1569224 TCATATTGAAGCATTAAA 1569241
>seq7084
Length=1258986
Score = 114 bits (126), Expect = 2e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099
||||| ||||| ||||||||| | || || ||| | |||||||| || | |||
Sbjct 1764 TACAAAACTGTTTGGGAGATTTCCGTGAAAACCTCGATTAAAATGGCTGCAGATCGCGGT 1705
Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159
| | ||| || |||||||| |||||||| | |||| || ||||||| ||| |
Sbjct 1704 GCATTCATCGATCAGAGTCAGTCGTTCAACATACACGTGGCTGAGCCCAACTATGGCAAG 1645
Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219
| ||||| ||||| || |||| ||||| || ||||||||||||||||| ||| ||
Sbjct 1644 CTTACTTCTATACATTTCTACGGCTGGAAGGCAGGTCTCAAGACGGGCATGTATTATTTG 1585
Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260
| || || | || | ||||| |||| |||||| |||||
Sbjct 1584 CGTACGAAACCAGCTGCAAATGCTATACAATTTACTGTGGA 1544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740992819622160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |