Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7104 116 3e-21 seq3141 89.7 4e-13 >seq7104 Length=1453772 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||||||||| || ||||| || || || || || || ||| Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || || |||||||||||| | |||||||||||||| || || Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || |||||| ||| || ||| | || || |||||| | || || Sbjct 422271 ATTCCTTCCTTATCTTGAATTTTAGCT-TTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| || |||| |||||| || ||||| ||||| Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || || || |||||||||||| ||| | | ||||||| Sbjct 422146 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTC 422087 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || || | || ||||||||||| || || |||||||||||||| Sbjct 422086 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTG 422027 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || ||| |||| || |||||| ||| || || | || ||||| | Sbjct 422026 AATCTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 421968 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 | || |||| || || || || |||||||| || |||| Sbjct 421967 TGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 421929 >seq3141 Length=2848 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GC 15194 ||||||||| | | | |||||||| | || || ||||| || || || || || || Sbjct 1571 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1512 Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 ||| || | ||||| ||||| || || ||| | || | ||| ||||| || Sbjct 1511 C---AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGG 1455 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 ||||||||||| || || ||||||| ||| ||| ||| || ||||| | || Sbjct 1454 CGGAATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTC 1395 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || ||||| ||||| || || |||||||| ||||||||||| Sbjct 1394 AACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362147568853206