Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 116 3e-21
seq3141 89.7 4e-13
>seq7104
Length=1453772
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | || | || ||||||||| || ||||| || || || || || || |||
Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || || |||||||||||| | |||||||||||||| || ||
Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| || || |||||| ||| || ||| | || || |||||| | || ||
Sbjct 422271 ATTCCTTCCTTATCTTGAATTTTAGCT-TTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || |||||||| || |||| |||||| || ||||| |||||
Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || || || || |||||||||||| ||| | | |||||||
Sbjct 422146 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTC 422087
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| || || | || ||||||||||| || || ||||||||||||||
Sbjct 422086 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTG 422027
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| || ||| || ||| |||| || |||||| ||| || || | || ||||| |
Sbjct 422026 AATCTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 421968
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371
| || |||| || || || || |||||||| || ||||
Sbjct 421967 TGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 421929
>seq3141
Length=2848
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GC 15194
||||||||| | | | |||||||| | || || ||||| || || || || || ||
Sbjct 1571 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1512
Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252
||| || | ||||| ||||| || || ||| | || | ||| ||||| ||
Sbjct 1511 C---AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGG 1455
Query 15253 TGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312
||||||||||| || || ||||||| ||| ||| ||| || ||||| | ||
Sbjct 1454 CGGAATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTC 1395
Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || | || ||||| ||||| || || |||||||| |||||||||||
Sbjct 1394 AACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362147568853206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |