Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 116 2e-21
seq3141 104 1e-17
>seq7104
Length=1453772
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | ||| ||||| || || || |||||||| |||| | || || ||| |||
Sbjct 422145 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 422086
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||| || || ||| ||||||||||| || || | ||| || |||||||| || |
Sbjct 422085 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 422026
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| || ||| |||| ||| |||||||| || || ||
Sbjct 422025 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 421966
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || | || || ||||| |||||||| ||
Sbjct 421965 CCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | || ||||| | || || || || || ||||| || || ||
Sbjct 422392 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 422333
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || || || ||||| || || ||| || || |||||||| || || | |||
Sbjct 422332 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 422273
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| ||| || | | ||| || ||| || | |||
Sbjct 422272 GATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||| ||| || ||||||||||| | |||||| |||||||| ||||||
Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164
>seq3141
Length=2848
Score = 104 bits (114), Expect = 1e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || | || ||||||||||| |||||||| || ||||| || |||| |
Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| || | || |||||||||||||| || |||| ||| || || || | ||
Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451
Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322
|| ||||| || || ||| || || || ||| || || || | |||
Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1391
Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || |||||||| ||||||||||||||||||||
Sbjct 1390 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318749759359068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |