Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7155 185 7e-42 >seq7155 Length=3116674 Score = 185 bits (204), Expect = 7e-42 Identities = 470/705 (67%), Gaps = 10/705 (1%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||| ||||| || || || | ||||| | || ||||| || ||||| || || Sbjct 2758595 TCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCACC 2758654 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 |||| ||| || ||||| || | | || || | ||| ||||| || ||| || Sbjct 2758655 GGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAACA 2758714 Query 13106 ATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACATCATACATGCAAAATCAC 13163 || ||| || || | | | |||| || ||| | ||||||| |||||| || |||| Sbjct 2758715 AT-ACGCTCATTACTTG-GTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 2758772 Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 | || | ||| ||||||| ||||| || || |||||||| | || ||||| | | Sbjct 2758773 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 2758832 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283 | ||||| |||| ||| || || | |||||| || || || || |||||||| | Sbjct 2758833 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAACGG 2758892 Query 13284 CTGCAAACGCTATCAACCTTTCACCATACGTA-CT-ATTTTTACTCTCTATCCACTTTCT 13341 | ||||| || || | | ||||||| | | || | || | ||||| Sbjct 2758893 CAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAA--ATCCAAGCAAG 2758950 Query 13342 GGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 ||||| | ||| || | || ||| ||| ||| | ||||| || || ||||| |||| Sbjct 2758951 CGCCCAATCTGCCTTGCGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGTAAT 2759009 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 | ||| || ||| |||||| ||||| || |||| |||||||||||| ||||| | Sbjct 2759010 TCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCA 2759069 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||| |||||||| ||||| || ||||| || || | ||||||| || || ||||| Sbjct 2759070 CATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCT 2759129 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | | || | ||| ||| ||||| || || || || ||| || || ||||| || | Sbjct 2759130 GGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTA 2759189 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640 | ||| |||||| | | ||| || || | | | |||||| | ||||| Sbjct 2759190 ACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTT 2759249 Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | || | |||||| ||||| || ||||| || || || | |||| Sbjct 2759250 TAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430944759882732