Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq7133 192 7e-44 seq7115 91.5 2e-13 >seq7133 Length=2056560 Score = 192 bits (212), Expect = 7e-44 Identities = 312/442 (71%), Gaps = 14/442 (3%) Strand=Plus/Minus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 ||| ||||| |||||||||| |||| ||||||| ||| | ||| ||||| || | Sbjct 1569257 TCGCGTTAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAA 1569198 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 || || | || || |||||| | |||| | |||||||| | ||| || | || Sbjct 1569197 AGTGTGGACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAA 1569138 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 || || || || | |||||| |||||||| ||||||||||| || | ||| || | Sbjct 1569137 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAA 1569078 Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATAC-ATGACATGGAG 7036 |||||||||||| |||| | | || ||||||| ||| || |||||| || | Sbjct 1569077 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTG-TGCAAGACAATGACAAGGTG 1569022 Query 7037 GTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCAT 7096 ||| | | ||| ||||| ||||||||||||| ||||| |||||||| ||||| Sbjct 1569021 GTAGAGCCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCAT 1568962 Query 7097 TTGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTT 7153 ||||| || ||| | ||| ||| ||||| | || | |||||||||||||| | ||| Sbjct 1568961 TTGGA-TTATTTCTGATTGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTT 1568905 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||| | | || ||| | || || || |||||||| | ||| ||||| ||||||| Sbjct 1568904 TGTAACTGTCTTTGCAGTTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAA 1568845 Query 7214 TAGGACCTAAATCACCTTCTTC 7235 || |||| ||||||||| || Sbjct 1568844 CTGGGCCTAGATCACCTTCCTC 1568823 >seq7115 Length=1944776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 164503 GGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTA 164562 ||||| ||||| | ||||| || | || |||| || |||||| ||||||||| || Sbjct 1444291 GGCTGCAAACACGTTAAAGGCATACTCTTGTATGGCCCACCTGGTACCGGTAAAACGTTG 1444350 Query 164563 ATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGT 164619 ||||| || |||| || | |||||| ||||| ||| |||||||||||||| Sbjct 1444351 ATGGCACGTCAAATTGG-CACTATGTTAAATGCGCGCGAGCCG--AAAATTGTTAATGGC 1444407 Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679 || || | ||| ||||||| ||||| || ||||| || ||| | || | ||| Sbjct 1444408 CCACAAATTTTGGACAAATACGTAGGCGAATCAGAGGCCAATATACGACGTCTCTTTGCC 1444467 Query 164680 GAGGCTGAAGAAGAACAAAA 164699 |||||||| ||||| |||| Sbjct 1444468 GAGGCTGAGGAAGAGGAAAA 1444487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595818624765600