Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq7133 192 7e-44
seq7115 91.5 2e-13
>seq7133
Length=2056560
Score = 192 bits (212), Expect = 7e-44
Identities = 312/442 (71%), Gaps = 14/442 (3%)
Strand=Plus/Minus
Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860
||| ||||| |||||||||| |||| ||||||| ||| | ||| ||||| || |
Sbjct 1569257 TCGCGTTAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAA 1569198
Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920
|| || | || || |||||| | |||| | |||||||| | ||| || | ||
Sbjct 1569197 AGTGTGGACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAA 1569138
Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980
|| || || || | |||||| |||||||| ||||||||||| || | ||| || |
Sbjct 1569137 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAA 1569078
Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATAC-ATGACATGGAG 7036
|||||||||||| |||| | | || ||||||| ||| || |||||| || |
Sbjct 1569077 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTG-TGCAAGACAATGACAAGGTG 1569022
Query 7037 GTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCAT 7096
||| | | ||| ||||| ||||||||||||| ||||| |||||||| |||||
Sbjct 1569021 GTAGAGCCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCAT 1568962
Query 7097 TTGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTT 7153
||||| || ||| | ||| ||| ||||| | || | |||||||||||||| | |||
Sbjct 1568961 TTGGA-TTATTTCTGATTGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTT 1568905
Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213
||| | | || ||| | || || || |||||||| | ||| ||||| |||||||
Sbjct 1568904 TGTAACTGTCTTTGCAGTTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAA 1568845
Query 7214 TAGGACCTAAATCACCTTCTTC 7235
|| |||| ||||||||| ||
Sbjct 1568844 CTGGGCCTAGATCACCTTCCTC 1568823
>seq7115
Length=1944776
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 164503 GGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTA 164562
||||| ||||| | ||||| || | || |||| || |||||| ||||||||| ||
Sbjct 1444291 GGCTGCAAACACGTTAAAGGCATACTCTTGTATGGCCCACCTGGTACCGGTAAAACGTTG 1444350
Query 164563 ATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGT 164619
||||| || |||| || | |||||| ||||| ||| ||||||||||||||
Sbjct 1444351 ATGGCACGTCAAATTGG-CACTATGTTAAATGCGCGCGAGCCG--AAAATTGTTAATGGC 1444407
Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679
|| || | ||| ||||||| ||||| || ||||| || ||| | || | |||
Sbjct 1444408 CCACAAATTTTGGACAAATACGTAGGCGAATCAGAGGCCAATATACGACGTCTCTTTGCC 1444467
Query 164680 GAGGCTGAAGAAGAACAAAA 164699
|||||||| ||||| ||||
Sbjct 1444468 GAGGCTGAGGAAGAGGAAAA 1444487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595818624765600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |