Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7134 129 3e-25 seq7106 118 6e-22 seq6915 113 2e-20 >seq7134 Length=2137532 Score = 129 bits (142), Expect = 3e-25 Identities = 83/90 (92%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 956325 AATAAAAAACTGAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 956384 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 956385 CGACGCTCTAACCAACTGAGCTAATGGGCC 956414 >seq7106 Length=1862430 Score = 118 bits (130), Expect = 6e-22 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| ||| | | | ||||||||||| |||||||||| |||||||||||||||||| Sbjct 1673191 ATTAAAAAATACTTGAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 1673250 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 1673251 CACGACGCTCTAACCAACTGAGCTAATGGGCC 1673282 >seq6915 Length=388549 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 382475 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 382534 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 382535 TGAGCTAATGGGCC 382548 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261468362502616