Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq6360 107 2e-19 >seq6360 Length=35628 Score = 107 bits (118), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||||||||| || |||||||| || | Sbjct 8386 TTTTTGGGAATAACTTCTAAACCGCTATATCGATCAATTCCATGAAGTAATCAGCACTCA 8445 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||| ||||| ||| ||||| || | || | ||||||||||| | ||| | | || Sbjct 8446 ACCTCACAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGA 8505 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG-TTTTTTCGGGATTACTCCGAAA 15666 || ||| | || |||| ||| | |||||| | |||||| | || |||| |||| Sbjct 8506 GAAATCTTTGACAAAAG-AAATTGCAAAAATCGATTTTTTTGAAATAACTCTGAAA 8560 Score = 104 bits (114), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||||||||| |||||||||||| || | Sbjct 6610 TTTTTGGGAATAACTTCTAAACGGCTATATCGATCAATTCCATAAACTAATCAGCACTCA 6669 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||| ||||| ||| ||||| || | || | ||||||||||| | ||| | | || Sbjct 6670 ACCTCACAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGA 6729 Query 15612 GATATCGTGA 15621 || |||||| Sbjct 6730 GAAGTCGTGA 6739 Score = 102 bits (112), Expect = 8e-18 Identities = 130/177 (73%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||||||||| | ||||| ||| || | Sbjct 4052 TTTTTGGGAATAACTTCTAAACGGCTATATCGATCAATTCCATAGCCTAATGAGCACTCA 4111 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||| ||||| ||| ||||| | | || | ||||||||| | | ||| | | || Sbjct 4112 ACCTCACAAAACTACGCCGATTATCGCAAACCGGGTCAAAATTGATCAATTTTCTTGCGA 4171 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG--TTTTTTCGGGATTACTCCGAAA 15666 || ||||| || |||| ||| || |||||| | |||||| | || |||| |||| Sbjct 4172 GAAATCGTTGACAAAAG-AAATCGCAAAAATCGATTTTTTTTGAAATAACTCTGAAA 4227 Score = 98.7 bits (108), Expect = 1e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 15516 CTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAACATCAAAAAACCACGTCGATTGC 15575 ||| |||||| ||||| || ||||||||||| | || ||||| ||||||||| || Sbjct 6740 CTCGACCGATTAATTCTGAACACTAATCAGCTTTCGACTCTGAAAAATCACGTCGATGGC 6799 Query 15576 CACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAGATATCGTGAACGAAA 15627 | || | |||||||||||||||||| ||||| |||||||||| |||||| Sbjct 6800 CGTAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGTTGACGAAA 6851 Score = 91.5 bits (100), Expect = 2e-14 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 1043 CTCTTGTAACTTTTGAACGACTTGACCGATTTCATCGCAGTTAGTGTCATTCGAAAGGGC 1102 || || ||||||||||||| | | ||||| || | | || |||||| |||| | Sbjct 8232 CTTTTATAACTTTTGAACGGATCAAGCGATT-CAACCC---TAACGTCATTTCAAAGAGT 8287 Query 1103 TTCACTAAACTTAGATTTCCTGAAAATTTGAACCGATTCGGACCGGTAGATTTCGAGAAA 1162 |||| | ||||||||||| | ||| ||||| |||||||||| ||||||||||||||||| Sbjct 8288 TTCATTTAACTTAGATTTTGTAAAATTTTGAGCCGATTCGGATCGGTAGATTTCGAGAAA 8347 Query 1163 A 1163 | Sbjct 8348 A 8348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50946178409076