Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_006660.1
Length=20197
Score E
Sequences producing significant alignments: (Bits) Value
seq6360 109 7e-20
seq7008 95.1 2e-15
seq6934 91.5 2e-14
seq7135 89.7 7e-14
seq5173 89.7 7e-14
seq7131 87.8 2e-13
seq6924 80.6 3e-11
>seq6360
Length=35628
Score = 109 bits (120), Expect = 7e-20
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 9896 TCACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGT 9955
|||||| |||| | | ||| | ||||||||||| | || | || ||||| ||| ||
Sbjct 6739 TCACGACTTCTCGCAAGAAAATTGATCGATTTTGACCCGGTTTGCGGTAATCGGCGTAGT 6680
Query 9956 TTTTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTA 10015
||| ||| ||| || |||||||||||| |||||||||||| || ||| |||| ||||||
Sbjct 6679 TTTGTGAGGTTGAGTGCTGATTAGTTTATGGAATTGATCGATATAGCCGTTTAGAAGTTA 6620
Query 10016 TTCCaaaaaa 10025
|||| |||||
Sbjct 6619 TTCCCAAAAA 6610
Score = 98.7 bits (108), Expect = 1e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 9922 CGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATTAGTT 9981
||||||||||| | || | || ||||| ||| ||||| ||| ||| || |||||||| ||
Sbjct 8489 CGATTTTGACCCGGTTTGCGGTAATCGGCGTAGTTTTGTGAGGTTGAGTGCTGATTACTT 8430
Query 9982 TTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCaaaaaa 10025
|||||||||||| || ||| |||| |||||||||| |||||
Sbjct 8429 CATGGAATTGATCGATATAGCGGTTTAGAAGTTATTCCCAAAAA 8386
Score = 93.3 bits (102), Expect = 5e-15
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 9898 ACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTT 9957
|||||||||| ||||| |||||||||||||||||| | || ||| ||||||||| |||
Sbjct 6843 ACGATATCTCACGAACAAATCAACCGATTTTGACCCGGTTTACGGCCATCGACGTGATTT 6784
Query 9958 TTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAG 10001
|| || | ||||||||||| || ||||| |||||| |||
Sbjct 6783 TTCAGAGTCGAAAGCTGATTAGTGTTCAGAATTAATCGGTCGAG 6740
Score = 87.8 bits (96), Expect = 2e-13
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 9898 ACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTT 9957
||||| |||| | | ||| | | ||||||||| | || | | ||||| ||| ||||
Sbjct 4179 ACGATTTCTCGCAAGAAAATTGATCAATTTTGACCCGGTTTGCGATAATCGGCGTAGTTT 4120
Query 9958 TTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATT 10017
| ||| ||| || ||| ||||| | |||||||||||| || ||| |||| ||||||||
Sbjct 4119 TGTGAGGTTGAGTGCTCATTAGGCTATGGAATTGATCGATATAGCCGTTTAGAAGTTATT 4060
Query 10018 CCaaaaaa 10025
|| |||||
Sbjct 4059 CCCAAAAA 4052
>seq7008
Length=767233
Score = 95.1 bits (104), Expect = 2e-15
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863
|||||| | |||||||||||| |||| || |||| || ||||| ||||||||| || ||
Sbjct 759995 GTTTTTCAAAGGGTAGAAAAGTATGGATAAGTTTCGGCAAAATCTAAAGGGGTC-GGTTC 759937
Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900
||||||||||||||||| || ||| |||| ||| ||
Sbjct 759936 AAAAGTGGTCGATTTGGTATGTAATACCCCGTATATA 759900
Score = 91.5 bits (100), Expect = 2e-14
Identities = 79/97 (81%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351
||| || |||| ||| || ||||||| ||||||||||| || ||||||||| ||||| |
Sbjct 759900 TATATACGGGGTATTACATACCAAATCGACCACTTTTGAACC-GACCCCTTTAGATTTTG 759958
Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388
| |||| || |||| |||||||||||| | ||||||
Sbjct 759959 CCGAAACTTATCCATACTTTTCTACCCTTTGAAAAAC 759995
>seq6934
Length=405937
Score = 91.5 bits (100), Expect = 2e-14
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 16806 TTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAA 16865
|||| | ||||||||||||||| | || ||||||| ||||| |||| |||| || ||||
Sbjct 216399 TTTTCACAGGGTAGAAAAGGATAGATAAGTTTCAGCAAAATCTAAAGCGGTCGGGTTCAA 216340
Query 16866 AAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900
|||||| |||||||| || ||| |||| ||| ||
Sbjct 216339 AAGTGGACGATTTGGTATGAAATACCCCATATATA 216305
Score = 91.5 bits (100), Expect = 2e-14
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351
||| ||||||| ||| || ||||||| |||||||||| || |||| |||| ||||| |
Sbjct 216305 TATATATGGGGTATTTCATACCAAATCGTCCACTTTTGAACCCGACCGCTTTAGATTTTG 216364
Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAA 15386
|||||| || | ||||||||||||||| | ||||
Sbjct 216365 CTGAAACTTATCTATCCTTTTCTACCCTGTGAAAA 216399
>seq7135
Length=2243651
Score = 89.7 bits (98), Expect = 7e-14
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351
||| ||||||| |||| | | ||||| ||||||||| | || ||||||||| ||||| |
Sbjct 2030113 TATATATGGGGTATTCTATACTAAATCGACCACTTTTAAACCCGACCCCTTTAGATTTTG 2030054
Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388
| |||| | ||||||||||||||||| | ||||||
Sbjct 2030053 CCGAAACTACTCCATCCTTTTCTACCCTTTGAAAAAC 2030017
Score = 89.7 bits (98), Expect = 7e-14
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863
|||||| | ||||||||||||||||| | |||| || ||||| ||||||||| || |
Sbjct 2030017 GTTTTTCAAAGGGTAGAAAAGGATGGAGTAGTTTCGGCAAAATCTAAAGGGGTCGGGTTT 2030076
Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900
||||||||||||||| | | |||| |||| ||| ||
Sbjct 2030077 AAAAGTGGTCGATTTAGTATAGAATACCCCATATATA 2030113
>seq5173
Length=14334
Score = 89.7 bits (98), Expect = 7e-14
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 16816 GTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGA 16875
|||||||||||||| || ||||||| ||| | |||||| || || ||||||||||||||
Sbjct 2407 GTAGAAAAGGATGGATAAGTTTCAGCAAAACCTAAAGGGATCGGGTTCAAAAGTGGTCGA 2348
Query 16876 TTTGGCGTGGAATGCCCCCTATGTATA 16902
||||| |||||| || | ||| ||||
Sbjct 2347 TTTGGTATGGAATACCTCATATATATA 2321
Score = 87.8 bits (96), Expect = 2e-13
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 15291 ATATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTG 15350
|||| |||| || |||||| ||||||| ||||||||||| || || |||||| | |||
Sbjct 2322 ATATATATGAGGTATTCCATACCAAATCGACCACTTTTGAACCCGATCCCTTTAGGTTTT 2381
Query 15351 GCTGAAAGTTTACCATCCTTTTCTAC 15376
||||||| || ||||||||||||||
Sbjct 2382 GCTGAAACTTATCCATCCTTTTCTAC 2407
>seq7131
Length=2475900
Score = 87.8 bits (96), Expect = 2e-13
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 16813 AGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGT 16872
||||| ||||| ||||| ||| ||||||| ||| | ||||||||| || |||||||||||
Sbjct 1082184 AGGGTGGAAAAAGATGGAAAAGTTTCAGCAAAAGCTAAAGGGGTCGGGTTCAAAAGTGGT 1082125
Query 16873 CGATTTGGCGTGGAATGCCCCCTATGTATAT 16903
| |||||| |||||| ||| ||| ||||
Sbjct 1082124 CAATTTGGTATGGAATATCCCATATACATAT 1082094
Score = 84.2 bits (92), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355
|||||| |||||| |||||| ||||||||||| || ||||||||| | ||| |||||
Sbjct 1082101 TATGGGATATTCCATACCAAATTGACCACTTTTGAACCCGACCCCTTTAGCTTTTGCTGA 1082160
Query 15356 AAGTTTACCATCCTTTTCTACCCT 15379
|| ||| ||||| ||||| |||||
Sbjct 1082161 AACTTTTCCATCTTTTTCCACCCT 1082184
>seq6924
Length=363564
Score = 80.6 bits (88), Expect = 3e-11
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 16817 TAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGAT 16876
||||||||||||| || ||||||| ||||| ||||| ||| || |||||||||||||||
Sbjct 296745 TAGAAAAGGATGGATAAGTTTCAGCAAAATCTAAAGGTGTCGGGTTCAAAAGTGGTCGAT 296686
Query 16877 TTGG 16880
||||
Sbjct 296685 TTGG 296682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 64506654737280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |