Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq6360 109 7e-20 seq7008 95.1 2e-15 seq6934 91.5 2e-14 seq7135 89.7 7e-14 seq5173 89.7 7e-14 seq7131 87.8 2e-13 seq6924 80.6 3e-11 >seq6360 Length=35628 Score = 109 bits (120), Expect = 7e-20 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 9896 TCACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGT 9955 |||||| |||| | | ||| | ||||||||||| | || | || ||||| ||| || Sbjct 6739 TCACGACTTCTCGCAAGAAAATTGATCGATTTTGACCCGGTTTGCGGTAATCGGCGTAGT 6680 Query 9956 TTTTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTA 10015 ||| ||| ||| || |||||||||||| |||||||||||| || ||| |||| |||||| Sbjct 6679 TTTGTGAGGTTGAGTGCTGATTAGTTTATGGAATTGATCGATATAGCCGTTTAGAAGTTA 6620 Query 10016 TTCCaaaaaa 10025 |||| ||||| Sbjct 6619 TTCCCAAAAA 6610 Score = 98.7 bits (108), Expect = 1e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9922 CGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATTAGTT 9981 ||||||||||| | || | || ||||| ||| ||||| ||| ||| || |||||||| || Sbjct 8489 CGATTTTGACCCGGTTTGCGGTAATCGGCGTAGTTTTGTGAGGTTGAGTGCTGATTACTT 8430 Query 9982 TTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATTCCaaaaaa 10025 |||||||||||| || ||| |||| |||||||||| ||||| Sbjct 8429 CATGGAATTGATCGATATAGCGGTTTAGAAGTTATTCCCAAAAA 8386 Score = 93.3 bits (102), Expect = 5e-15 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9898 ACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTT 9957 |||||||||| ||||| |||||||||||||||||| | || ||| ||||||||| ||| Sbjct 6843 ACGATATCTCACGAACAAATCAACCGATTTTGACCCGGTTTACGGCCATCGACGTGATTT 6784 Query 9958 TTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAG 10001 || || | ||||||||||| || ||||| |||||| ||| Sbjct 6783 TTCAGAGTCGAAAGCTGATTAGTGTTCAGAATTAATCGGTCGAG 6740 Score = 87.8 bits (96), Expect = 2e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9898 ACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTT 9957 ||||| |||| | | ||| | | ||||||||| | || | | ||||| ||| |||| Sbjct 4179 ACGATTTCTCGCAAGAAAATTGATCAATTTTGACCCGGTTTGCGATAATCGGCGTAGTTT 4120 Query 9958 TTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATT 10017 | ||| ||| || ||| ||||| | |||||||||||| || ||| |||| |||||||| Sbjct 4119 TGTGAGGTTGAGTGCTCATTAGGCTATGGAATTGATCGATATAGCCGTTTAGAAGTTATT 4060 Query 10018 CCaaaaaa 10025 || ||||| Sbjct 4059 CCCAAAAA 4052 >seq7008 Length=767233 Score = 95.1 bits (104), Expect = 2e-15 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | |||||||||||| |||| || |||| || ||||| ||||||||| || || Sbjct 759995 GTTTTTCAAAGGGTAGAAAAGTATGGATAAGTTTCGGCAAAATCTAAAGGGGTC-GGTTC 759937 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 ||||||||||||||||| || ||| |||| ||| || Sbjct 759936 AAAAGTGGTCGATTTGGTATGTAATACCCCGTATATA 759900 Score = 91.5 bits (100), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| || |||| ||| || ||||||| ||||||||||| || ||||||||| ||||| | Sbjct 759900 TATATACGGGGTATTACATACCAAATCGACCACTTTTGAACC-GACCCCTTTAGATTTTG 759958 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 | |||| || |||| |||||||||||| | |||||| Sbjct 759959 CCGAAACTTATCCATACTTTTCTACCCTTTGAAAAAC 759995 >seq6934 Length=405937 Score = 91.5 bits (100), Expect = 2e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 16806 TTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAA 16865 |||| | ||||||||||||||| | || ||||||| ||||| |||| |||| || |||| Sbjct 216399 TTTTCACAGGGTAGAAAAGGATAGATAAGTTTCAGCAAAATCTAAAGCGGTCGGGTTCAA 216340 Query 16866 AAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 |||||| |||||||| || ||| |||| ||| || Sbjct 216339 AAGTGGACGATTTGGTATGAAATACCCCATATATA 216305 Score = 91.5 bits (100), Expect = 2e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| ||||||| ||| || ||||||| |||||||||| || |||| |||| ||||| | Sbjct 216305 TATATATGGGGTATTTCATACCAAATCGTCCACTTTTGAACCCGACCGCTTTAGATTTTG 216364 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAA 15386 |||||| || | ||||||||||||||| | |||| Sbjct 216365 CTGAAACTTATCTATCCTTTTCTACCCTGTGAAAA 216399 >seq7135 Length=2243651 Score = 89.7 bits (98), Expect = 7e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| ||||||| |||| | | ||||| ||||||||| | || ||||||||| ||||| | Sbjct 2030113 TATATATGGGGTATTCTATACTAAATCGACCACTTTTAAACCCGACCCCTTTAGATTTTG 2030054 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 | |||| | ||||||||||||||||| | |||||| Sbjct 2030053 CCGAAACTACTCCATCCTTTTCTACCCTTTGAAAAAC 2030017 Score = 89.7 bits (98), Expect = 7e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | ||||||||||||||||| | |||| || ||||| ||||||||| || | Sbjct 2030017 GTTTTTCAAAGGGTAGAAAAGGATGGAGTAGTTTCGGCAAAATCTAAAGGGGTCGGGTTT 2030076 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 ||||||||||||||| | | |||| |||| ||| || Sbjct 2030077 AAAAGTGGTCGATTTAGTATAGAATACCCCATATATA 2030113 >seq5173 Length=14334 Score = 89.7 bits (98), Expect = 7e-14 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 16816 GTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGA 16875 |||||||||||||| || ||||||| ||| | |||||| || || |||||||||||||| Sbjct 2407 GTAGAAAAGGATGGATAAGTTTCAGCAAAACCTAAAGGGATCGGGTTCAAAAGTGGTCGA 2348 Query 16876 TTTGGCGTGGAATGCCCCCTATGTATA 16902 ||||| |||||| || | ||| |||| Sbjct 2347 TTTGGTATGGAATACCTCATATATATA 2321 Score = 87.8 bits (96), Expect = 2e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 15291 ATATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTG 15350 |||| |||| || |||||| ||||||| ||||||||||| || || |||||| | ||| Sbjct 2322 ATATATATGAGGTATTCCATACCAAATCGACCACTTTTGAACCCGATCCCTTTAGGTTTT 2381 Query 15351 GCTGAAAGTTTACCATCCTTTTCTAC 15376 ||||||| || |||||||||||||| Sbjct 2382 GCTGAAACTTATCCATCCTTTTCTAC 2407 >seq7131 Length=2475900 Score = 87.8 bits (96), Expect = 2e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16813 AGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGT 16872 ||||| ||||| ||||| ||| ||||||| ||| | ||||||||| || ||||||||||| Sbjct 1082184 AGGGTGGAAAAAGATGGAAAAGTTTCAGCAAAAGCTAAAGGGGTCGGGTTCAAAAGTGGT 1082125 Query 16873 CGATTTGGCGTGGAATGCCCCCTATGTATAT 16903 | |||||| |||||| ||| ||| |||| Sbjct 1082124 CAATTTGGTATGGAATATCCCATATACATAT 1082094 Score = 84.2 bits (92), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355 |||||| |||||| |||||| ||||||||||| || ||||||||| | ||| ||||| Sbjct 1082101 TATGGGATATTCCATACCAAATTGACCACTTTTGAACCCGACCCCTTTAGCTTTTGCTGA 1082160 Query 15356 AAGTTTACCATCCTTTTCTACCCT 15379 || ||| ||||| ||||| ||||| Sbjct 1082161 AACTTTTCCATCTTTTTCCACCCT 1082184 >seq6924 Length=363564 Score = 80.6 bits (88), Expect = 3e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 16817 TAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGTCGAT 16876 ||||||||||||| || ||||||| ||||| ||||| ||| || ||||||||||||||| Sbjct 296745 TAGAAAAGGATGGATAAGTTTCAGCAAAATCTAAAGGTGTCGGGTTCAAAAGTGGTCGAT 296686 Query 16877 TTGG 16880 |||| Sbjct 296685 TTGG 296682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64506654737280