Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7155 178 1e-39 >seq7155 Length=3116674 Score = 178 bits (196), Expect = 1e-39 Identities = 455/692 (66%), Gaps = 10/692 (1%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||| | |||||| || |||||||||||||| || || || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | || || || | || || || |||||| |||||| | | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | |||| || | | ||| |||| |||||||||||||| || ||||| Sbjct 2758714 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 2758773 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| | || ||||| | |||| |||||| |||||||| || || |||||||| || Sbjct 2758774 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 2758833 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || || | ||| || || || ||||| ||| ||| ||||| || || |||||| Sbjct 2758834 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTG--AAGAAGATACCTTCAACG 2758891 Query 21608 GCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCT 21667 ||||||||||||| || |||||||| | | | | || | ||||| Sbjct 2758892 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGC 2758951 Query 21668 GCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtt 21726 ||||| | |||||| ||||| || | ||||| || ||||| || || | | ||| Sbjct 2758952 GCCCAATCTGCCTTGCGCTTTACGGCAGGC-ATTGTCTCTATAGCATTGAATAAGTAATT 2759010 Query 21727 tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTAT 21786 ||| | || | || ||||||||||||||||| | Sbjct 2759011 CCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCAC 2759070 Query 21787 ATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC--G 21844 ||| || ||||| || |||||||| || || || | |||||||| ||| || || | Sbjct 2759071 ATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTG 2759130 Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 | | ||| |||| | | | |||||||| || || |||||| ||||| ||||| || Sbjct 2759131 GCAGAAA--CGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 2759188 Query 21905 AATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCT 21964 || | | | ||||||| |||||| ||||| || | | |||||| | |||| Sbjct 2759189 AACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCT 2759248 Query 21965 TTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || || | ||||||||| || |||||| || Sbjct 2759249 TTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531853154985840