Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 178 1e-39
>seq7155
Length=3116674
Score = 178 bits (196), Expect = 1e-39
Identities = 455/692 (66%), Gaps = 10/692 (1%)
Strand=Plus/Plus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || |||||||| ||||| | |||||| || |||||||||||||| || || ||
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | ||| | || || || | || || || |||||| |||||| | |
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713
Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489
|| | |||| || | | ||| |||| |||||||||||||| || |||||
Sbjct 2758714 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 2758773
Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549
||| | || ||||| | |||| |||||| |||||||| || || |||||||| ||
Sbjct 2758774 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 2758833
Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607
| || || | ||| || || || ||||| ||| ||| ||||| || || ||||||
Sbjct 2758834 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTG--AAGAAGATACCTTCAACG 2758891
Query 21608 GCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCT 21667
||||||||||||| || |||||||| | | | | || | |||||
Sbjct 2758892 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGC 2758951
Query 21668 GCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtt 21726
||||| | |||||| ||||| || | ||||| || ||||| || || | | |||
Sbjct 2758952 GCCCAATCTGCCTTGCGCTTTACGGCAGGC-ATTGTCTCTATAGCATTGAATAAGTAATT 2759010
Query 21727 tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTAT 21786
||| | || | || ||||||||||||||||| |
Sbjct 2759011 CCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCAC 2759070
Query 21787 ATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC--G 21844
||| || ||||| || |||||||| || || || | |||||||| ||| || || |
Sbjct 2759071 ATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTG 2759130
Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904
| | ||| |||| | | | |||||||| || || |||||| ||||| ||||| ||
Sbjct 2759131 GCAGAAA--CGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 2759188
Query 21905 AATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCT 21964
|| | | | ||||||| |||||| ||||| || | | |||||| | ||||
Sbjct 2759189 AACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCT 2759248
Query 21965 TTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
|| || | ||||||||| || |||||| ||
Sbjct 2759249 TTAGAAAGATCTACTTCCTCTACTGTCCAGAA 2759280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531853154985840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |